PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr4P21700_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

MYB

Protein Properties

Length: 232aa MW: 26346.8 Da PI: 7.3034

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr4P21700_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.5	4.9e-16	20	67	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +lv++v+ +G + W+t a++ g+ ++k+c++rw++yl GSMUA_Achr4P21700_001 20 RGAWSAEEDRKLVEYVTAHGDKKWRTLAAKAGLFPCGKSCRLRWLNYL 67 89****************************666*********97 PP
2	Myb_DNA-binding	57.3	3.6e-18	73	118	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++l+++++++lG++ W++Ia +++ gRt++++k++w+++l GSMUA_Achr4P21700_001 73 RGNMSEEEEDLIIRLHNLLGNR-WALIAGRLP-GRTDNEIKNHWNTHL 118 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.862	15	67	IPR017930	Myb domain
SuperFamily	SSF46689	3.37E-27	18	114	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-10	19	69	IPR001005	SANT/Myb domain
Pfam	PF00249	3.7E-13	20	67	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-21	21	74	IPR009057	Homeodomain-like
CDD	cd00167	1.91E-8	22	67	No hit	No description
PROSITE profile	PS51294	26.618	68	122	IPR017930	Myb domain
SMART	SM00717	2.5E-17	72	120	IPR001005	SANT/Myb domain
Pfam	PF00249	9.8E-17	73	118	IPR001005	SANT/Myb domain
CDD	cd00167	3.10E-12	75	118	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.1E-24	75	121	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MVKKRENEGK KKKSVMAWKR GAWSAEEDRK LVEYVTAHGD KKWRTLAAKA GLFPCGKSCR 60 LRWLNYLRPG IKRGNMSEEE EDLIIRLHNL LGNRWALIAG RLPGRTDNEI KNHWNTHLSK 120 RSLTIQDLNA KMNQKLESSS GVASPSPALA SDALPVLHLT ADGSELNVGQ PFDFTLNWNA 180 TVNEFEAEGY GFADHEELFR GGSSVDAHRH HLPLQLDELS EFIDCEEYYF LS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-28	20	124	7	110	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in roots and hypocotyl. Together with GL3 or BHLH2, promotes the formation of non-hair developing cells (atrichoblasts) et the N position in root epidermis. Regulates stomata spatial distribution in hypocotyls. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes such as GL2 and of CPC. {ECO:0000269\|PubMed:10589676, ECO:0000269\|PubMed:11585796, ECO:0000269\|PubMed:14627722, ECO:0000269\|PubMed:15361138, ECO:0000269\|PubMed:15795220, ECO:0000269\|PubMed:16207757}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Transcriptional activation correlates with reduced histone acetylation on H3 and H4 mediated by HDA18 in N cells. Repressed by CPC in hair cells (H position). {ECO:0000269\|PubMed:11910008, ECO:0000269\|PubMed:16176989}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009398977.1	1e-170	PREDICTED: transcription factor WER-like
Swissprot	Q9SEI0	2e-50	WER_ARATH; Transcription factor WER
TrEMBL	M0SQY3	1e-172	M0SQY3_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr4P21700_001	1e-172	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17778	5	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35550.1	2e-52	MYB family protein

Publications ? help Back to Top
Savage N, et al. Positional signaling and expression of ENHANCER OF TRY AND CPC1 are tuned to increase root hair density in response to phosphate deficiency in Arabidopsis thaliana. PLoS ONE, 2013. 8(10): p. e75452 [PMID:24130712] Cheng Y, et al. Brassinosteroids control root epidermal cell fate via direct regulation of a MYB-bHLH-WD40 complex by GSK3-like kinases. Elife, 2018. [PMID:24771765] Kiefer CS, et al. Correction: Arabidopsis AIP1-2 restricted by WER-mediated patterning modulates planar polarity. Development, 2015. 142(5): p. 1022 [PMID:25715402] Kwak SH,Song SK,Lee MM,Schiefelbein J TORNADO1 regulates root epidermal patterning through the WEREWOLF pathway in Arabidopsis thaliana. Plant Signal Behav, 2015. 10(12): p. e1103407 [PMID:26451798] Zhu Y, et al. The Histone Chaperone NRP1 Interacts with WEREWOLF to Activate GLABRA2 in Arabidopsis Root Hair Development. Plant Cell, 2017. 29(2): p. 260-276 [PMID:28138017] Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana. Plant J., 2017. 92(2): p. 305-316 [PMID:28771873] Mira MM, et al. Expression of Arabidopsis class 1 phytoglobin (AtPgb1) delays death and degradation of the root apical meristem during severe PEG-induced water deficit. J. Exp. Bot., 2017. 68(20): p. 5653-5668 [PMID:29059380] Kohanová J, et al. Root hair abundance impacts cadmium accumulation in Arabidopsis thaliana shoots. Ann. Bot., 2018. 122(5): p. 903-914 [PMID:29394308]