PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr4P21900_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 187aa MW: 21728.3 Da PI: 8.984

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr4P21900_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	135.7	3.1e-42	11	138	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratk..sgyWkat 86 p+Gf+F Ptd el+ +yL++k++g++l+ +++++v++y+++P dL +k++ +e +w+fF++r++ky++g r+nr+t +gyWkat GSMUA_Achr4P21900_001 11 PAGFHFVPTDGELIGHYLRAKLDGEDLQY-KAFNDVKLYDYHPADLVEKYEDyGEGRWFFFTSRERKYPNGIRPNRTTCdgDGYWKAT 97 89************************9.88**********8655553666****************8876689* PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g++k ++ +++ vg++++Lvfy+g+a +g+ktdW+m+ey+ GSMUA_Achr4P21900_001 98 GTEKIIYY-NRKPVGIRRSLVFYTGKAGNGQKTDWIMQEYTT 138 **99.999**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.14E-46	8	146	IPR003441	NAC domain
PROSITE profile	PS51005	43.273	10	171	IPR003441	NAC domain
Pfam	PF02365	2.7E-22	11	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MERRGPISQF PAGFHFVPTD GELIGHYLRA KLDGEDLQYK AFNDVKLYDY HPADLVEKYE 60 DYGEGRWFFF TSRERKYPNG IRPNRTTCDG DGYWKATGTE KIIYYNRKPV GIRRSLVFYT 120 GKAGNGQKTD WIMQEYTTKS TSNKPHRNSD GSHQPHRNSD GSMQVSIIFK ICFRLDSSMI 180 NGCNDIW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-36	1	136	6	140	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-36	1	136	6	140	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-36	1	136	6	140	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-36	1	136	6	140	NO APICAL MERISTEM PROTEIN
3swm_A	1e-36	1	136	9	143	NAC domain-containing protein 19
3swm_B	1e-36	1	136	9	143	NAC domain-containing protein 19
3swm_C	1e-36	1	136	9	143	NAC domain-containing protein 19
3swm_D	1e-36	1	136	9	143	NAC domain-containing protein 19
3swp_A	1e-36	1	136	9	143	NAC domain-containing protein 19
3swp_B	1e-36	1	136	9	143	NAC domain-containing protein 19
3swp_C	1e-36	1	136	9	143	NAC domain-containing protein 19
3swp_D	1e-36	1	136	9	143	NAC domain-containing protein 19
4dul_A	1e-36	1	136	6	140	NAC domain-containing protein 19
4dul_B	1e-36	1	136	6	140	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010917234.1	1e-56	NAC domain-containing protein 1-like
TrEMBL	M0SR03	1e-139	M0SR03_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr4P21900_001	1e-140	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15867	13	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.2	1e-39	NAC family protein