PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P22750_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family YABBY
Protein Properties Length: 188aa    MW: 20978.9 Da    PI: 9.3993
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P22750_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY214.53.5e-6631583170
                  YABBY   3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekee 90 
                             +  +e++Cyv+CnfCnt+lavsvP +s+f+ v+vrCGhC+ llsvn+    q l+ ++      ++ ++ ++  +++ ++    ++ 
  GSMUA_Achr4P22750_001   3 AQILPERICYVHCNFCNTVLAVSVPGNSSFNNVAVRCGHCSILLSVNMGDLLQRLPFQDF-----QKLQTCNTAAQGSRMECGSPSKF 85 
                            67789****************************************************995.....22223333333344433333333 PP

                  YABBY  91 sastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                            s s+  s+  +++ +++ +p      rPPekrqrvPsayn+fikeeiqrika+nP+ishreafs+aaknWahfP+i fgl
  GSMUA_Achr4P22750_001  86 SRSSLLST--MPNYQEQMLP-----TRPPEKRQRVPSAYNKFIKEEIQRIKAKNPEISHREAFSTAAKNWAHFPHIQFGL 158
                            33333333..4555555555.....7****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.4E-697158IPR006780YABBY protein
SuperFamilySSF470954.45E-8103152IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.107.1E-5106152IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MSAQILPERI CYVHCNFCNT VLAVSVPGNS SFNNVAVRCG HCSILLSVNM GDLLQRLPFQ  60
DFQKLQTCNT AAQGSRMECG SPSKFSRSSL LSTMPNYQEQ MLPTRPPEKR QRVPSAYNKF  120
IKEEIQRIKA KNPEISHREA FSTAAKNWAH FPHIQFGLTV DGNKQPKTDE QVAATVTAPG  180
SQKAQSFF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT7952270.0KT795227.1 Musa acuminata isolate 67 YABBY2 (YABBY2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398349.11e-140PREDICTED: axial regulator YABBY 5-like isoform X1
SwissprotQ10FZ79e-68YAB2_ORYSJ; Protein YABBY 2
TrEMBLM0SR871e-139M0SR87_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P22750_0011e-139(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.12e-62YABBY family protein