PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr4P23030_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 250aa MW: 28758.3 Da PI: 8.0398

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr4P23030_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	149.9	1.3e-46	18	146	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 pGfrF+Ptdee+v +yL++kv++k+l++ evike+diyk++PwdLp kv+++ e yfF++r +ky+++ r+nr+t sg+Wkatg d+ GSMUA_Achr4P23030_001 18 PGFRFRPTDEEIVGFYLRRKVDEKPLSV-EVIKEMDIYKYDPWDLP-KVRSTGCEEYFFCRRGRKYKNSIRPNRVTGSGFWKATGVDR 103 9*************************.99***********.677777899**************************** PP NAM 91 evlsk..kgelvglkktLvfy...kgrapkgektdWvmheyrl 128 +++++ +g +glkk+Lvfy + a kg+kt+W+mhe+rl GSMUA_Achr4P23030_001 104 PIYAAgnSGDCIGLKKSLVFYsrgRTAAAKGTKTEWMMHEFRL 146 8666667******86656899**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-50	15	167	IPR003441	NAC domain
PROSITE profile	PS51005	51.068	16	167	IPR003441	NAC domain
Pfam	PF02365	1.0E-24	18	146	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MWREKGRVME DEDVVPLPGF RFRPTDEEIV GFYLRRKVDE KPLSVEVIKE MDIYKYDPWD 60 LPKVRSTGCE EYFFCRRGRK YKNSIRPNRV TGSGFWKATG VDRPIYAAGN SGDCIGLKKS 120 LVFYSRGRTA AAKGTKTEWM MHEFRLPCDS PCTQEAEVWT ICRVFKRSVS HRANPNSWKA 180 SDHKEQTPPE SSSESFNGNY FHGGQWNSTN QASVPLCSDT VQSPSMNEFF SGDDNWDELG 240 RIMNSMISNI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-41	18	170	19	168	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-41	18	170	19	168	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-41	18	170	19	168	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-41	18	170	19	168	NO APICAL MERISTEM PROTEIN
3swm_A	4e-41	18	172	22	173	NAC domain-containing protein 19
3swm_B	4e-41	18	172	22	173	NAC domain-containing protein 19
3swm_C	4e-41	18	172	22	173	NAC domain-containing protein 19
3swm_D	4e-41	18	172	22	173	NAC domain-containing protein 19
3swp_A	4e-41	18	172	22	173	NAC domain-containing protein 19
3swp_B	4e-41	18	172	22	173	NAC domain-containing protein 19
3swp_C	4e-41	18	172	22	173	NAC domain-containing protein 19
3swp_D	4e-41	18	172	22	173	NAC domain-containing protein 19
4dul_A	3e-41	18	170	19	168	NAC domain-containing protein 19
4dul_B	3e-41	18	170	19	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009398319.2	0.0	PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X2
Swissprot	Q9SK55	5e-75	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	M0SRB4	0.0	M0SRB4_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr4P23030_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1191	38	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	2e-77	NAC domain containing protein 42

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]