PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P23240_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 146aa    MW: 16796 Da    PI: 9.1725
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P23240_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.2e-11701101055
                            HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  GSMUA_Achr4P23240_001  70 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 110
                            9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.50760109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-1465126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-1166115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.6E-1366120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.72E-1169114No hitNo description
PfamPF000102.9E-870110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MQVVKTPKRG KKRRNRSCDG EEESNTTTMN CRLNSCSYSW EDDSRALQHL STGKGADQEP  60
STNPQSQYAR KRRERINERL RILQNLVPNG TKVDISTMLE EAVHYVKFLQ LQIKLLSSDQ  120
LWMYAPIAYN GINIGLEIDI SPQQPQ
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398288.11e-103PREDICTED: transcription factor bHLH54-like
SwissprotQ84WK02e-46BH085_ARATH; Transcription factor bHLH85
TrEMBLM0SRD51e-105M0SRD5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P23240_0011e-106(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43103270
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.19e-36ROOT HAIR DEFECTIVE 6-LIKE 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Rymen B, et al.
    ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator.
    Plant Physiol., 2017. 173(3): p. 1750-1762
    [PMID:28167701]
  3. Han H, et al.
    Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution.
    Planta, 2017. 246(5): p. 1019-1028
    [PMID:28770336]