PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P23620_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 224aa    MW: 24412.6 Da    PI: 9.8939
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P23620_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.61e-201868155
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           ++++GVr ++ +gr++AeIrdp   gk+ r++lg+++taeeAa+a++aa+++++g
  GSMUA_Achr4P23620_001 18 THFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTYDTAEEAARAYDAAARQFRG 68
                           589*******.**********8...557***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.87E-191876No hitNo description
PfamPF008472.0E-141868IPR001471AP2/ERF domain
SMARTSM003801.1E-361982IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-221976IPR016177DNA-binding domain
PROSITE profilePS5103223.7751976IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-321976IPR001471AP2/ERF domain
PRINTSPR003679.6E-112031IPR001471AP2/ERF domain
PRINTSPR003679.6E-114258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MATREKPAAG DEGGGKETHF RGVRKRPWGR YAAEIRDPGK KSRVWLGTYD TAEEAARAYD  60
AAARQFRGSK ARTNFPRPDA CPQSSTVESS SREAAVPPLA IPLPPSLDLD ILRRSGISGC  120
ARFPFQPYPA VATPAMQPGH RYFLFDTIVR SEKAAAAAAI SRHHLLTLYP PTIVADLNSA  180
IASGVQSDSD SSMVNLHRNH RSSPPHRMLP LDLDLNLPPP PEIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-211676263ATERF1
3gcc_A5e-211676263ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398958.11e-122PREDICTED: ethylene-responsive transcription factor 4-like
TrEMBLM0SRH31e-162M0SRH3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P23620_0011e-163(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38463174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.19e-24erf domain protein 9