PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr4P23650_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

SBP

Protein Properties

Length: 187aa MW: 20708.9 Da PI: 10.2678

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr4P23650_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.4	6.3e-41	75	152	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+e+C+adl+eak+yhrrh+vCe+hska+vv+v+gl+qrfCqqCsrfhe+sefD++krsCrrrLa+hnerrrk+++ GSMUA_Achr4P23650_001 75 CCQAEKCAADLAEAKRYHRRHRVCEAHSKAAVVIVAGLRQRFCQQCSRFHEVSEFDDSKRSCRRRLAGHNERRRKSSS 152 6**************************************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.3E-34	69	137	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.932	73	150	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	9.42E-38	73	153	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.9E-31	76	149	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MEPRRLSSKP QSKSRKKVRN EMAGAAVHDD GGEEDEEVAP GGEAAEKDKK RRPSSSVATK 60 RGSSSGSGGG VSPPCCQAEK CAADLAEAKR YHRRHRVCEA HSKAAVVIVA GLRQRFCQQC 120 SRFHEVSEFD DSKRSCRRRL AGHNERRRKS SSDSQGDGLS RFRQPDEDGR MQMSDSGNST 180 HKHFQIK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-36	66	149	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009398957.2	1e-133	PREDICTED: squamosa promoter-binding protein 1-like
Swissprot	Q38740	1e-40	SBP2_ANTMA; Squamosa promoter-binding protein 2
TrEMBL	M0SRH6	1e-131	M0SRH6_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr4P23650_001	1e-132	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8524	32	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15270.1	4e-41	squamosa promoter binding protein-like 5

Publications ? help Back to Top
Klein J,Saedler H,Huijser P A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet., 1996. 250(1): p. 7-16 [PMID:8569690]