PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P23790_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family B3
Protein Properties Length: 889aa    MW: 98363.8 Da    PI: 8.1086
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P23790_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.75.1e-19435534198
                            EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvF 82 
                            f+k l+ sd+++ grlvlpkk+ae++    +  ++e+  l+++d sg+ W ++++y  +++s++yvl+ G     +a +L++gD+v+F
  GSMUA_Achr4P23790_001 435 FEKMLSASDAGRIGRLVLPKKCAEAYfpiiS--QPEGLPLKVQDASGKDWVFQFRYwpNNNSRMYVLE-GVTPCIQAMQLQAGDTVTF 519
                            89**************************754..445567*****************89999999***9.******************* PP

                            EE-SSSEE..EEEEE- CS
                     B3  83 kldgrsefelvvkvfr 98 
                            ++++  e++l +++++
  GSMUA_Achr4P23790_001 520 SRID-PEGKLIMGFRK 534
                            *987.77777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-30432542IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-19432538IPR015300DNA-binding pseudobarrel domain
CDDcd100173.77E-22433534No hitNo description
PROSITE profilePS5086311.35435536IPR003340B3 DNA binding domain
SMARTSM010196.0E-21435536IPR003340B3 DNA binding domain
PfamPF023623.3E-16435534IPR003340B3 DNA binding domain
PROSITE profilePS5105013.55658708IPR011124Zinc finger, CW-type
PfamPF074961.1E-10663705IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 889 aa     Download sequence    Send to blast
MEAVIYANNS INLFHSNDIS WHLLISNICG WVDLISSLVP FLLVVMSSSS SAAVVTAKIC  60
FNSECKEPLP DPLPTRRKGW RLRSGEIADL CDRCSCSFEQ GNFCETFHSD DAGWRNCKTC  120
GKRVHCGCVV SVSTYVLLDA GGVDCVACAR KSLVMAPNQV ASSPMFMSQQ GPERREFPAK  180
SWKPVSGPFF GQWRQAPHMW NMTSAQSDLQ QRLSYEFDRP NCIEKLAPGG RYSILAHEKK  240
FENISEKPIT GNLNNVARER YANGKVGIDA ASTFGAYHGE GNADTVQDSC RLVGDSDSVS  300
TRKSVNADPC STSSSGANLD AHPNSCVNSL PSSAIKEDSS SLGLAAVFQS TNCSKEPTRF  360
SANQSQSQAD PLSKQFYPPS VIDPEVQSQM RNGKTRVDNR TRSQLLPRYW PRITDQELQQ  420
ISGGGDSNSV ITPLFEKMLS ASDAGRIGRL VLPKKCAEAY FPIISQPEGL PLKVQDASGK  480
DWVFQFRYWP NNNSRMYVLE GVTPCIQAMQ LQAGDTVTFS RIDPEGKLIM GFRKASCGSS  540
EQDSQAVKSG NGFSTPPEKQ RNCSNFANEG VLQKDGLSAR SSQGTRRKGG NLGSKSKRLR  600
IENEDSMELK LTWEEAQQLL RPPPNCVPSV VLVEGHEFEE YEEAPVLGKR TYFTTNQSGE  660
NYQWAQCEDC SKWRRLPVDA LLPSRWTCSN NTWDTERSLC SAAQELSLEQ LAELIPCKTG  720
APKRSKVKVE TDNIEVSDGL DTLANLAILG EGENLPPSSQ PTTKHPRHRP GCTCIVCIQP  780
PSGKGPKHKQ SCTCNVCLTV KRRFRTLMLR REKRQSEKEA ETARKQQKQQ PNQSSPVKAQ  840
APQIDLNIQP EREEETSPKS ESEKRKEVLR HGSVRSYVTA ILSPTSNQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A4e-624115422131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1800813KRRFRTLMLRREKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398217.10.0PREDICTED: B3 domain-containing protein Os07g0563300
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLM0SRJ00.0M0SRJ0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P23790_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-151HSI2-like 1