PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P24440_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 175aa    MW: 20369.4 Da    PI: 10.1903
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P24440_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.48.3e-061666554
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS
                    HLH  5 hnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54
                            +  E+ RR ++++  ++L +++P+  ++ sk  l+  +   +A+ YIk+L
  GSMUA_Achr4P24440_001 16 RKTTEKYRRMHMKNLCFKLSSIIPEEHRTISKDvLTQQDNFDQATSYIKKL 66
                           5778*********************778899999***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-7876IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-81377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MMKSRSGGGA NSKVERKTTE KYRRMHMKNL CFKLSSIIPE EHRTISKDVL TQQDNFDQAT  60
SYIKKLRERI ERLKQRKLMQ TSTVRRDTTM RFASPIIEVR HQDLNLEILV ISDLNKRFMF  120
HEVINVIEEE GAEVVTANFS IVGDKIYHTI HSQAVSSRIG LEASSVYERL KDLIN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16373KKLRERIERLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398132.11e-127PREDICTED: uncharacterized protein LOC103982820
TrEMBLM0SRQ51e-125M0SRQ5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P24440_0011e-126(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.14e-28bHLH family protein