PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P24830_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 435aa    MW: 47278.9 Da    PI: 5.8591
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P24830_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.30.000162372741355
                            HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                            R++i ++++eLre++P+ a      K s  + L k+++++  Lq
  GSMUA_Achr4P24830_001 237 RQQIQDRLNELREIVPNgA------KCSIDALLDKTIKHMLFLQ 274
                            89***************66......8888889999999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.61E-4215274No hitNo description
PROSITE profilePS5088810.791224273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-5237279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-4237278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MVTGINVKQA ENSILAAVNS LVLESKSKEN SSIPPTQLLS DNDQFNGMEL NMRANSLVQE  60
LWDGVTMPVG HNSCSDMSAG ISDCYSAMET GSIHGTDKGL FSESGLQQLL DAIAGDHFSK  120
TSAYRSSANP ISGLNLEHQF STSVGGPSVY MNQVPSVCAP FMNGASDVLL PHCNPEIVHG  180
SVKQAPSNSN IRLWIDDSCS INTESSVLSQ SKKPEEAAKV KKRARPGEST RPRPKDRQQI  240
QDRLNELREI VPNGAKCSID ALLDKTIKHM LFLQSVTKYA DKLKQADEPK IISEQSGVVL  300
KDNPGGASGG GATWAYEVAG QTMVCPIIVE DLTPSGQMLV EMVCEDRGLF LEIADIIRGF  360
GLIILKGVME IRECKIWARF LVEANREVTR MDIFLSLIQL LQQNSCLRSG DLATKVVNKG  420
APMFPSHHQS PVYSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009389431.10.0PREDICTED: transcription factor LHW-like isoform X1
RefseqXP_009389438.10.0PREDICTED: transcription factor LHW-like isoform X2
TrEMBLM0SRU40.0M0SRU4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P24830_0010.0(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.13e-55conserved peptide upstream open reading frame 7