PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P24880_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 431aa    MW: 46688.1 Da    PI: 7.7824
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P24880_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.41.2e-08108129426
                            ---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                            + C++f++ G C yG++C+F H+
  GSMUA_Achr4P24880_001 108 RVCNYFLA-GNCTYGEKCRFLHS 129
                            57******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.3052652IPR000571Zinc finger, CCCH-type
SMARTSM003560.0632851IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.136104131IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5106130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6106129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-6108129IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-6108129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.109.0E-44131422IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.3E-6135174IPR001680WD40 repeat
SuperFamilySSF509783.85E-44136427IPR017986WD40-repeat-containing domain
PfamPF004006.6E-5138174IPR001680WD40 repeat
PROSITE profilePS5029418.747142391IPR017986WD40-repeat-containing domain
PROSITE profilePS5008214.251142183IPR001680WD40 repeat
PRINTSPR003202.4E-6161175IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780161175IPR019775WD40 repeat, conserved site
SMARTSM0032060214251IPR001680WD40 repeat
SMARTSM003200.076258295IPR001680WD40 repeat
PfamPF004000.045263295IPR001680WD40 repeat
PROSITE profilePS5008210.876265304IPR001680WD40 repeat
PRINTSPR003202.4E-6282296IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780282296IPR019775WD40 repeat, conserved site
SMARTSM003203.0E-4298335IPR001680WD40 repeat
PfamPF004000.003300334IPR001680WD40 repeat
PRINTSPR003202.4E-6322336IPR020472G-protein beta WD-40 repeat
SMARTSM0032020339382IPR001680WD40 repeat
SMARTSM003201.6385422IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MEATGRNGNK RMHQRLGPSQ ATAPDRANNK VCYHWRAGRC NRHPCPFLHS EIPTPQQQSA  60
SPDGGVAKRN LVWKNPSNAG AASGPPSKWG KGRGGGAVGR PPGKAPDRVC NYFLAGNCTY  120
GEKCRFLHSW FVGDSFSLLT SLQGHQKAVS GIALPSGSDK LYSGSKDESV RVWDCQSGQC  180
VGVINVGGEV GCMISEGPWI FIGVPNAVKA WNMQTATDLS LDGPIGQVYS LVVGNELLFA  240
GTQDGRILAW KFIAVGNCFE PAASLVGHQL SVVSLVVGAV RLYSGSMDHM IRVWDLATLQ  300
CIQTLTDHTS VVMSVLCWDQ FLLSCSLDKT IKVWVATESG NLEVTYTHNE EHGVLSLFGM  360
LDAQAKPILL CSCNDNSVRL YDLPSFSERG KIFSKEEVRA MQVGPSGLFF TGDATGEVKV  420
WNWLPNEMPH S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A2e-211394228323Tako8
6g6n_A2e-211394228323Tako8
6g6n_B2e-211394228323Tako8
6g6n_C2e-211394228323Tako8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398076.10.0PREDICTED: zinc finger CCCH domain-containing protein 17 isoform X1
SwissprotQ0DYP50.0C3H17_ORYSJ; Zinc finger CCCH domain-containing protein 17
TrEMBLM0SRU90.0M0SRU9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P24880_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20263442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]