PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P24910_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family BBR-BPC
Protein Properties Length: 346aa    MW: 39108.5 Da    PI: 10.2189
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P24910_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind326.48.3e-100533461301
              GAGA_bind   1 mdddgsre..rnkg.yye........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalver 77 
                            md+ g+re  r+k  +y+        p+++lken++++l+  +aer+++++er++a+sekkaa+aerd a+lqrd+a+aern+a++er
  GSMUA_Achr4P24910_001  53 MDEIGHREngRHKNdQYKtahaqwmmPHHQLKENQTIKLL--MAEREKALQERDMAISEKKAALAERDTAYLQRDAAIAERNNAILER 138
                            8999999889999999999999999888999999888886..88******************************************** PP

              GAGA_bind  78 dnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkak 165
                            d++++al++++++ +s+++            ++l+   ++q+++++   +  +++  +++     +  ++k+++k+ + +   +kk++
  GSMUA_Achr4P24910_001 139 DDAIAALEYARENCMSNNS----------APQQLHDAPNNQTRETPRS-EAFHNSGGPETL---GKLIKTKRSRKKTEVEASSSKKMT 212
                            *********9987443332..........2221112112223333322.222222222222...222222222222222222222222 PP

              GAGA_bind 166 kkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrga 253
                            k  +ks+k  ++ +k s  + +++e+ks+dl+ln+v++D+s++P+PvCsCtG  +qCYkWGnGGWqSaCCt+t+S+yPLPv +++r+a
  GSMUA_Achr4P24910_001 213 KFPRKSKKVGEDLNKVS--SLKHHEWKSQDLGLNQVTFDDSSMPAPVCSCTGRYQQCYKWGNGGWQSACCTMTLSMYPLPVLPNKRHA 298
                            22222222222222222..346789*************************************************************** PP

              GAGA_bind 254 RiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                            R+agrKmS++af+klL++LaaeG+dls pvDLkdhWAkHGtn+++ti+
  GSMUA_Achr4P24910_001 299 RVAGRKMSGSAFRKLLSRLAAEGHDLSLPVDLKDHWAKHGTNRYITIK 346
                            ***********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.3E-13453346IPR010409GAGA-binding transcriptional activator
PfamPF062178.6E-10053346IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MFSKKKILKD FSGQLTPRGG SSRKEGDEEG RKRGCSLKII ETLNSSYKSI AVMDEIGHRE  60
NGRHKNDQYK TAHAQWMMPH HQLKENQTIK LLMAEREKAL QERDMAISEK KAALAERDTA  120
YLQRDAAIAE RNNAILERDD AIAALEYARE NCMSNNSAPQ QLHDAPNNQT RETPRSEAFH  180
NSGGPETLGK LIKTKRSRKK TEVEASSSKK MTKFPRKSKK VGEDLNKVSS LKHHEWKSQD  240
LGLNQVTFDD SSMPAPVCSC TGRYQQCYKW GNGGWQSACC TMTLSMYPLP VLPNKRHARV  300
AGRKMSGSAF RKLLSRLAAE GHDLSLPVDL KDHWAKHGTN RYITIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398067.10.0PREDICTED: barley B recombinant-like protein D
RefseqXP_009398068.10.0PREDICTED: barley B recombinant-like protein D
RefseqXP_009398069.10.0PREDICTED: barley B recombinant-like protein D
RefseqXP_009398070.10.0PREDICTED: barley B recombinant-like protein D
RefseqXP_009398071.10.0PREDICTED: barley B recombinant-like protein D
RefseqXP_018679871.10.0PREDICTED: barley B recombinant-like protein D
SwissprotQ5VSA81e-120BBRD_ORYSJ; Barley B recombinant-like protein D
TrEMBLM0SRV20.0M0SRV2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P24910_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62263756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-106basic pentacysteine 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]