PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P24960_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GRAS
Protein Properties Length: 485aa    MW: 51407.4 Da    PI: 6.2019
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P24960_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS171.28e-532044302230
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                            ++ Ll+ A+a+ +g+le+++a La l+  a p+gdp +Rl a++  AL +rl++  +++ ++ p ++ +   s e+++a+++++++sP
  GSMUA_Achr4P24960_001 204 RQMLLDTATALGEGNLEAVRANLAVLKRAADPRGDPEHRLMAVMIAALLSRLNH--PQVGSSHPITDLR---SPEHFMATQMLYDLSP 286
                            689**************************************************9..9999999999998...9*************** PP

                   GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelg 173
                            ++k+++++a +aIlea+++e+++Hi+Df+++qG+Q+ aLl aLa+R + pp +RiT+v++p+s     +   ++++g+r++++Ae+ g
  GSMUA_Achr4P24960_001 287 CFKLGFVAASSAILEATKEESKIHIVDFEVGQGGQYDALLLALAKR-RCPPAVRITAVADPSSPftniNIGDMRAVGDRIKNLAERAG 373
                            *********************************************9.5679*********99888999999***************** PP

                   GRAS 174 vpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLkl 230
                            v+++f+v v+ r ++l+  +L ++p +Eal+ nl + l r++desvs +++rde+L+ 
  GSMUA_Achr4P24960_001 374 VRLRFRV-VSLRAAELDAASLGCEPgEEALIANLPFVLSRVPDESVSPDNPRDELLRR 430
                            ******9.799**************889****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098529.755177485IPR005202Transcription factor GRAS
PfamPF035142.8E-50204430IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MASGFPGREL GLGGNGEGNL LKRTLLDMER QQMQHAILLR SVRQRTQAVP SVSMFDPVVG  60
GLSCNSSAAA APERMGSSLS SVDCSEPGFT ARTGLPPPVS ATATVNLPAP ESRSSGSMRD  120
QLRELERRLL LDDEEEAEAS APSGSAVTHA EWGEAIQRLI SPPPPLLPTA VSRLSPSPTD  180
SSSSTVSFAS CSPPSSLPSP PPSRQMLLDT ATALGEGNLE AVRANLAVLK RAADPRGDPE  240
HRLMAVMIAA LLSRLNHPQV GSSHPITDLR SPEHFMATQM LYDLSPCFKL GFVAASSAIL  300
EATKEESKIH IVDFEVGQGG QYDALLLALA KRRCPPAVRI TAVADPSSPF TNINIGDMRA  360
VGDRIKNLAE RAGVRLRFRV VSLRAAELDA ASLGCEPGEE ALIANLPFVL SRVPDESVSP  420
DNPRDELLRR AAARGSPDRG WAEAGLARRA VNAVAREGAE REEAGGLALG LGWMGRVLTV  480
ASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-1522443024224GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398059.10.0PREDICTED: scarecrow-like protein 8
TrEMBLM0SRV70.0M0SRV7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P24960_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41883474
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.16e-50SCARECROW-like 8