PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P24970_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family B3
Protein Properties Length: 235aa    MW: 25777.8 Da    PI: 8.7307
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P24970_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.91.2e-10961265786
                            TEEEE-TTHHHHHHHHT--TT-EEEEEE-.S CS
                     B3  57 gryvltkGWkeFvkangLkegDfvvFkld.g 86 
                            ++yv+tkGW++Fvk+++L++gD+v F +  g
  GSMUA_Achr4P24970_001  96 QSYVMTKGWSRFVKEKRLDAGDIVSFGRGvG 126
                            78************************95423 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-86795IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.5E-1569137IPR015300DNA-binding pseudobarrel domain
CDDcd100171.57E-1169121No hitNo description
PfamPF023621.0E-796134IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-1096142IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MEFTTGRRDG FYIIGEESKH PSLCPLSSSS SSTPPISSAF RWHVGPSDSA SNGTGGGRRE  60
SNFFTVKEHM FDKVVTPSDV GKLNRLVIPK QHAENQSYVM TKGWSRFVKE KRLDAGDIVS  120
FGRGVGESGS DHLYIDWKPR LENHDIPRLP PLVPLTGPLL HNQAEAKRVR LFGVNLDSPE  180
TQDDPGAPAD RSPSARRLRT CSTHPFPPFP RGSTESSAAS SSTSKEQHLT LDLGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A9e-31671404113B3 domain-containing transcription factor NGA1
5os9_B9e-31671404113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3745465e-32AK374546.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3068K15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398930.11e-86PREDICTED: B3 domain-containing protein Os02g0683500-like
TrEMBLM0SRV81e-171M0SRV8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P24970_0011e-172(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.16e-31B3 family protein