PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr4P25530_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

WOX

Protein Properties

Length: 211aa MW: 23110.9 Da PI: 4.9755

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr4P25530_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	69.2	5.1e-22	76	136	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t++ql++Le+ F++ n +ps+++++e++++l +++e++V++WFqNrRa+ k+ GSMUA_Achr4P25530_001 76 RQRWTPTPTQLQILETIFYEgNGTPSKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 136 89***************99************************************97 PP
2	Wus_type_Homeobox	103.1	2e-33	75	138	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPtp+Q++iLe+++++G tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++k+ GSMUA_Achr4P25530_001 75 SRQRWTPTPTQLQILETIFYEGNGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKK 138 689***********************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.04E-19	69	139	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.1E-18	71	139	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.289	72	137	IPR001356	Homeobox domain
SMART	SM00389	6.9E-15	74	141	IPR001356	Homeobox domain
CDD	cd00086	7.98E-15	76	138	No hit	No description
Pfam	PF00046	8.5E-20	76	136	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MEEGVAEEGA VCAKVMTDEQ MEVLRKQIAA YATICEQLVE MHRAIAAQQD SLSGMRLGSL 60 CSDPLMAPGV AKLSSRQRWT PTPTQLQILE TIFYEGNGTP SKQKIKEITS ELSQHGQISE 120 TNVYNWFQNR RARSKRKKQP GAGPNAAESE AEVESLNEKK AKAHGNLSPT VDDGPFQSPD 180 ISSELRFADP ESNGSQSMFA LGDISKYGDA F

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00617	PBM	Transfer from AT4G35550	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009397998.1	1e-158	PREDICTED: WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	2e-73	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	M0SS14	1e-156	M0SS14_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr4P25530_001	1e-157	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	4e-68	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]