PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr4P26400_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

GRAS

Protein Properties

Length: 584aa MW: 62101.3 Da PI: 8.8273

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr4P26400_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	344.4	2e-105	205	584	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 ++ Lle A a+++g+le a+a L l+ a+p+gd+ qRl+a+++ AL +rl + +++lp + s+e++aa+++++e+sP GSMUA_Achr4P26400_001 205 RQMLLETAAAIADGNLETATANLVVLKRVANPRGDAEQRLTAVMVDALISRLKL-PQAGSSSLPIAALC---SAEHFAATQMLYELSP 288 689***********************************************98.33344566777776...9*********** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.....egppslRiTgvgspesg.....skeeleetgerLak 167 ++k++ +taN aIlea++++ ++Hi+Dfd++qG+Q++ Ll+aLa+R +g+pslRiT+v++p+s s +l+++g+rL+k GSMUA_Achr4P26400_001 289 CFKLGLITANLAILEATKEQPMIHILDFDVGQGGQYAVLLHALAERHhlrpaAGAPSLRITAVSDPTSPftnnnSGGNLRAVGNRLEK 376 ******************************************99988999*******998789999999******* PP GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255 +Ae+ g+ ++fnv v+ r ++l+ ++Lr++pgEal+Vnl+++l r++desvs +++rde+L+ v+ l+P+vv +veqe++++++ F++ GSMUA_Achr4P26400_001 377 LAERAGLAVRFNV-VHLRAAELDASALRCEPGEALVVNLAFALSRVPDESVSPTNPRDEILRRVRALRPRVVALVEQEINTSTAAFAA 463 ********9.7999****************************************************************** PP GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343 rf ea+ +y al++sl+a+++r+s +r+ vE+ l+r++ n va+ega+r+er+e ++kWr+r+++aGF +vpl+ + + +k+ l+ GSMUA_Achr4P26400_001 464 RFGEACAHYGALLESLDATVARDSVQRARVEAG-LARRALNSVANEGADRVERCEVFGKWRARMGMAGFDSVPLGPAVIEPVKARLAS 550 *****************************.999*********************************************** PP GRAS 344 vk.sdgyrveee.sgslv.lgWkdrpLvsvSaWr 374 + ++g+++ +e g + +gWk+r L+++S+Wr GSMUA_Achr4P26400_001 551 IRsNRGFTMRDEaGGHGLgFGWKGRVLTVASSWR 584 9****97733333459***********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	51.487	178	561	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.8E-103	205	584	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 584 aa Download sequence Send to blast
MASGFPGREL GYGVRLPIPA RSEAGNGGLL KRSLTEMDRL QLQQQMQLQH TFFLRSVKQR 60 TLFNSPASPH FSPPLPPADL SSGSSSSLIS AKLTQDGLAR SREQSSAPQV AASGAESRPS 120 AAVRDRLQEL ERRLLLDEEE GEGDVSTSGS AVTTAEWSEA MQQLITPPTS AKNPLSASPT 180 NSSSTTVSSS ASCSPSSSSV ASSSRQMLLE TAAAIADGNL ETATANLVVL KRVANPRGDA 240 EQRLTAVMVD ALISRLKLPQ AGSSSLPIAA LCSAEHFAAT QMLYELSPCF KLGLITANLA 300 ILEATKEQPM IHILDFDVGQ GGQYAVLLHA LAERHHLRPA AGAPSLRITA VSDPTSPFTN 360 NNSGGNLRAV GNRLEKLAER AGLAVRFNVV HLRAAELDAS ALRCEPGEAL VVNLAFALSR 420 VPDESVSPTN PRDEILRRVR ALRPRVVALV EQEINTSTAA FAARFGEACA HYGALLESLD 480 ATVARDSVQR ARVEAGLARR ALNSVANEGA DRVERCEVFG KWRARMGMAG FDSVPLGPAV 540 IEPVKARLAS IRSNRGFTMR DEAGGHGLGF GWKGRVLTVA SSWR

Sequence ? help Back to Top

Protein Sequence Length: 584 aa Download sequence Send to blast

MASGFPGREL GYGVRLPIPA RSEAGNGGLL KRSLTEMDRL QLQQQMQLQH TFFLRSVKQR  60
TLFNSPASPH FSPPLPPADL SSGSSSSLIS AKLTQDGLAR SREQSSAPQV AASGAESRPS  120
AAVRDRLQEL ERRLLLDEEE GEGDVSTSGS AVTTAEWSEA MQQLITPPTS AKNPLSASPT  180
NSSSTTVSSS ASCSPSSSSV ASSSRQMLLE TAAAIADGNL ETATANLVVL KRVANPRGDA  240
EQRLTAVMVD ALISRLKLPQ AGSSSLPIAA LCSAEHFAAT QMLYELSPCF KLGLITANLA  300
ILEATKEQPM IHILDFDVGQ GGQYAVLLHA LAERHHLRPA AGAPSLRITA VSDPTSPFTN  360
NNSGGNLRAV GNRLEKLAER AGLAVRFNVV HLRAAELDAS ALRCEPGEAL VVNLAFALSR  420
VPDESVSPTN PRDEILRRVR ALRPRVVALV EQEINTSTAA FAARFGEACA HYGALLESLD  480
ATVARDSVQR ARVEAGLARR ALNSVANEGA DRVERCEVFG KWRARMGMAG FDSVPLGPAV  540
IEPVKARLAS IRSNRGFTMR DEAGGHGLGF GWKGRVLTVA SSWR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-42	223	584	22	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009397918.1	0.0	PREDICTED: scarecrow-like protein 8
TrEMBL	M0SSA2	0.0	M0SSA2_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr4P26400_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4188	34	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52510.1	8e-92	SCARECROW-like 8