PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P26430_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family B3
Protein Properties Length: 250aa    MW: 27832.5 Da    PI: 9.2832
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P26430_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B398.25.3e-3161164198
                            EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                            f+kv tpsdv+k++rlv+pk++ae+h     + +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk++gL++gD+v F++
  GSMUA_Achr4P26430_001  61 FDKVVTPSDVGKLNRLVVPKQHAERHlpmdALANEKGLLLCFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKGLDAGDTVSFSR 148
                            89****************************77778999*************************************************6 PP

                            -.SS.SEE..EEEEE- CS
                     B3  85 d.gr.sefelvvkvfr 98 
                              g+  + +l++ + r
  GSMUA_Achr4P26430_001 149 GvGEaGRHRLYIDWKR 164
                            5466666666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-3954168IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.19E-2959167IPR015300DNA-binding pseudobarrel domain
CDDcd100172.21E-2659160No hitNo description
PfamPF023624.5E-2861165IPR003340B3 DNA binding domain
PROSITE profilePS5086314.36761164IPR003340B3 DNA binding domain
SMARTSM010193.3E-2161166IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MELTHGKRES FYDTDQEDEQ VEFCRHPPFV PCSPSPSSLS TGVRSIDGMG NDSFILKEHM  60
FDKVVTPSDV GKLNRLVVPK QHAERHLPMD ALANEKGLLL CFEDRTGKPW RFRYSYWNSS  120
QSYVMTKGWS RFVKEKGLDA GDTVSFSRGV GEAGRHRLYI DWKRRPQSRA LPRAGSSGVP  180
SAPLVRGQAA VKRVRLFGVN LDCPDTEGDA NCRIRSTPPV GAPRFQPRTA PPLLEPSRAV  240
GETLACSSSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A7e-61571674115B3 domain-containing transcription factor NGA1
5os9_B7e-61571674115B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7270011e-100KJ727001.1 Zea mays clone pUT3977 ABI3VP1 transcription factor (ABI8) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398898.11e-159PREDICTED: B3 domain-containing protein Os03g0120900-like
SwissprotQ8LMR98e-67Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLM0SSA50.0M0SSA5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P26430_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.17e-61B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]