PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr4P27220_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

TCP

Protein Properties

Length: 220aa MW: 22119.2 Da PI: 8.7119

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr4P27220_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	79.9	6.9e-25	1	93	24	122
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaakskksqksaasalnla 111 ++a caar+F+L++eLG+++d++ti WLl+qa+pai+++tgt++ +a ++ +++ +++ +a+s+a+ ++++ aa + + GSMUA_Achr4P27220_001 1 MPAACAARIFQLTRELGHKSDGETIKWLLEQAEPAIIAATGTGTVPAIAT------TVGGTLKIPTEAPSSAPVTSTSAAAADDPAAN 82 9*****************************************99999444......22333334444455544444444444444444 PP TCP 112 kesrakarara 122 e ak+r r+ GSMUA_Achr4P27220_001 83 GEDAAKKRRRK 93 45555555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	9.7E-19	1	71	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	20.134	1	39	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MPAACAARIF QLTRELGHKS DGETIKWLLE QAEPAIIAAT GTGTVPAIAT TVGGTLKIPT 60 EAPSSAPVTS TSAAAADDPA ANGEDAAKKR RRKLQPLRSG GGAVVAAGGA TGATSIPPGA 120 LWMVPPSAAV ATAPSSQAQI WTFPPGPQII NLASVQPVSA TGAAGSPAAP DSSDAAPAAA 180 RKPGVSVWDQ RMGHHLLSNS VPAGCPPPTF LIYIYIYIYI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	87	92	KKRRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681}.
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681, ECO:0000269\|PubMed:9338963}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009397838.1	3e-88	PREDICTED: transcription factor PCF2-like
Swissprot	A2YXQ1	1e-37	PCF2_ORYSI; Transcription factor PCF2
Swissprot	Q6ZBH6	1e-37	PCF2_ORYSJ; Transcription factor PCF2
TrEMBL	M0SSI4	1e-153	M0SSI4_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr4P27220_001	1e-153	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3912	31	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	1e-29	TCP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]