PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P28090_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 226aa    MW: 25138.5 Da    PI: 8.2155
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P28090_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.87.9e-161462148
                           TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                           +g+W+++Ed +l+ +++ +G+g +W + ++++g++R++k+c++rw++yl
  GSMUA_Achr4P28090_001 14 KGPWSPDEDAKLKSYIEHHGTGgNWIALPHKIGLKRCGKSCRLRWLNYL 62
                           79*********************************************97 PP
2Myb_DNA-binding42.41.7e-1368111146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            rg +++eEd+++ +++   G++ W+ Ia+ ++ gRt++++k++w++
  GSMUA_Achr4P28090_001  68 RGGFSEEEDDIICRLFVSIGSR-WSVIASQLP-GRTDNDVKNYWNT 111
                            788*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.806962IPR017930Myb domain
SuperFamilySSF466892.45E-2611109IPR009057Homeodomain-like
SMARTSM007176.0E-121364IPR001005SANT/Myb domain
PfamPF002494.3E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-241569IPR009057Homeodomain-like
CDDcd001673.61E-91662No hitNo description
PROSITE profilePS5129421.34763117IPR017930Myb domain
SMARTSM007171.8E-1267115IPR001005SANT/Myb domain
PfamPF002493.8E-1268111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-2470117IPR009057Homeodomain-like
CDDcd001676.48E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPD EDAKLKSYIE HHGTGGNWIA LPHKIGLKRC GKSCRLRWLN  60
YLRPNLKRGG FSEEEDDIIC RLFVSIGSRW SVIASQLPGR TDNDVKNYWN TRLKKKLLGK  120
HAKGAEAKGD DNGGITGSPQ QPAPIDHVRH ELDGRFYIDA ANHGSSSVMP STVPCLVSPW  180
LQEDSGRQAL QCLNDLTTEL DEILRFNSLM YSSMMEGCER DATASI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009397743.11e-169PREDICTED: transcription factor RAX3-like
SwissprotQ9M2Y97e-76RAX3_ARATH; Transcription factor RAX3
TrEMBLM0SSS11e-168M0SSS1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P28090_0011e-169(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.12e-73myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]