PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P28260_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family M-type_MADS
Protein Properties Length: 246aa    MW: 27098.7 Da    PI: 6.6317
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P28260_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.46.9e-221866149
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                           k+ien+  r+++fskRrngi+ KA+ELS+LC+++ av+i s+tgkl+ +
  GSMUA_Achr4P28260_001 18 KKIENEEARYISFSKRRNGIFGKASELSTLCGTDLAVLISSPTGKLHSF 66
                           68*********************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.6E-281069IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.2071070IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.98E-241186IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-171232IPR002100Transcription factor, MADS-box
PfamPF003198.0E-221966IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-173247IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-174768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MLREKKKTSK GKQRIEMKKI ENEEARYISF SKRRNGIFGK ASELSTLCGT DLAVLISSPT  60
GKLHSFGSPS VALVVDRFLS TGVDHSSGSV HEQSRRGQTI QDLNHRLMEL ARRLEDAKAK  120
KAALQERLEA AARGLDCERI DDLEGLGLDE LDRLMESLGR LKARANARTE EILTGISPEP  180
TTVDHVGPWR HGGICTVHSD SDGLGAQCPS NPVLAMTNQF DSAAPRSNPL METIDFLDIN  240
GLFEEF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398872.10.0PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLM0SST80.0M0SST8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P28260_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-26AGAMOUS-like 62