PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P28270_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family TALE
Protein Properties Length: 271aa    MW: 30858.8 Da    PI: 5.8868
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P28270_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.2e-091992322255
                            SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
               Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                             +yps++e+  LA+++gL+ +q+ +WF N+R ++
  GSMUA_Achr4P28270_001 199 WPYPSETEKVALAESTGLDPKQINNWFINQRKRH 232
                            58*****************************885 PP
2ELK26.51.5e-09153173122
                    ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                            ELKh+Ll KY+gyLgsL+qE+s
  GSMUA_Achr4P28270_001 153 ELKHHLL-KYGGYLGSLRQELS 173
                            9*****9.8***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012556.6E-20751IPR005540KNOX1
PfamPF037904.9E-22950IPR005540KNOX1
SMARTSM012562.8E-2755106IPR005541KNOX2
PfamPF037913.5E-2460105IPR005541KNOX2
PfamPF037892.6E-6153173IPR005539ELK domain
SMARTSM011883.3E-4153173IPR005539ELK domain
PROSITE profilePS5007112.989172235IPR001356Homeobox domain
SuperFamilySSF466895.13E-20173248IPR009057Homeodomain-like
SMARTSM003897.2E-14174239IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-27177237IPR009057Homeodomain-like
CDDcd000864.17E-13184236No hitNo description
PfamPF059201.7E-16192231IPR008422Homeobox KN domain
PROSITE patternPS000270210233IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MCPSDAEDVR AKIVSHPQYS SLIGAYIDCQ KVGAPPDVVE RLSAIARELQ SRCTRRQGSS  60
SDPELDQFME AYCDLLVKYR EELTRPLHEA TDFLKRVESQ LNALTNTSSP RLFSFEPADE  120
RCEGVTSSEE DPDASGGGDI DLPLIDSHGE DKELKHHLLK YGGYLGSLRQ ELSKKKKKGK  180
LPKEARQKLL NWWELHCKWP YPSETEKVAL AESTGLDPKQ INNWFINQRK RHWKPSEDMQ  240
FVVMDSFHPQ NAAALYMEGQ FMVDGLYRTG P
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009397723.10.0PREDICTED: homeobox protein rough sheath 1-like
SwissprotO041351e-120KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLM0SST90.0M0SST9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P28270_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40613873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-115KNOTTED-like from Arabidopsis thaliana