PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr4P28530_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bZIP

Protein Properties

Length: 424aa MW: 45066 Da PI: 5.1734

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr4P28530_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	50.6	4.2e-16	249	304	3	58
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 ++kr rr+ +NRe+ArrsR+RK+a + eLe v +L eN++L k+l ++++++ GSMUA_Achr4P28530_001 249 DIKRIRRMLSNRESARRSRRRKQAHLSELEVQVSQLRIENSSLLKRLTDINQKYSD 304 68********************************************9999998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.6E-12	246	302	No hit	No description
SMART	SM00338	1.5E-18	247	311	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.404	249	301	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.0E-14	250	303	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.69E-11	250	301	No hit	No description
CDD	cd14702	4.88E-7	252	303	No hit	No description
PROSITE pattern	PS00036	0	254	269	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	8.3E-21	318	367	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071215	Biological Process	cellular response to abscisic acid stimulus
GO:0071333	Biological Process	cellular response to glucose stimulus
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MERVFSVDEI GDSFWAASPA PPPGLPLPPG GAAMNRSPSE WYFERFLAEE PTPAPTAASS 60 SPNPNPNPSF HPNPNRNVPP NPSASSSVVG SNFCEGRREL GRVGDDEVVE IKAPIVVAVP 120 PQPSDLPATV DPGHYQTLLK HKLDIACAAV AMSRVHPGSS VQDSASIADS MSPISDVSHL 180 GSQAPVKGNA STVQHKAGGG PGGVPALSIL QNSGTQGRPA TSGSSREQSD DDDEVEGDAE 240 TNDNMDVTDI KRIRRMLSNR ESARRSRRRK QAHLSELEVQ VSQLRIENSS LLKRLTDINQ 300 KYSDAAVDNR ILKADVETLR AKVKMAEETV KRVTGVSPLY PIISDMSNIS LSFAGSPSDA 360 TSDAAVPNAV RGAAAAGRIA GPASLQRIDS LEHLEERMFG GPTSPLQWDT AAWDPDTSLT 420 NNKN

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MERVFSVDEI GDSFWAASPA PPPGLPLPPG GAAMNRSPSE WYFERFLAEE PTPAPTAASS  60
SPNPNPNPSF HPNPNRNVPP NPSASSSVVG SNFCEGRREL GRVGDDEVVE IKAPIVVAVP  120
PQPSDLPATV DPGHYQTLLK HKLDIACAAV AMSRVHPGSS VQDSASIADS MSPISDVSHL  180
GSQAPVKGNA STVQHKAGGG PGGVPALSIL QNSGTQGRPA TSGSSREQSD DDDEVEGDAE  240
TNDNMDVTDI KRIRRMLSNR ESARRSRRRK QAHLSELEVQ VSQLRIENSS LLKRLTDINQ  300
KYSDAAVDNR ILKADVETLR AKVKMAEETV KRVTGVSPLY PIISDMSNIS LSFAGSPSDA  360
TSDAAVPNAV RGAAAAGRIA GPASLQRIDS LEHLEERMFG GPTSPLQWDT AAWDPDTSLT  420
NNKN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	263	270	RRSRRRKQ
2	265	270	SRRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter (PubMed:9049271, PubMed:11572990). Does not bind to promoters of other major storage genes such as glutelin, prolamin and albumin (PubMed:9049271). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:11572990, ECO:0000269\|PubMed:9049271}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00040	PBM	Transfer from AT5G28770	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009397696.1	0.0	PREDICTED: light-inducible protein CPRF2-like isoform X1
Swissprot	Q7X9A8	2e-82	RSBZ2_ORYSJ; bZIP transcription factor RISBZ2
TrEMBL	M0SSW5	0.0	M0SSW5_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr4P28530_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3488	38	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.2	2e-49	bZIP family protein

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Yang D,Wu L,Hwang YS,Chen L,Huang N Expression of the REB transcriptional activator in rice grains improves the yield of recombinant proteins whose genes are controlled by a Reb-responsive promoter. Proc. Natl. Acad. Sci. U.S.A., 2001. 98(20): p. 11438-43 [PMID:11572990] Cheng S,Wang Z,Hong M Rice bZIP protein, REB, interacts with GCN4 motif in promoter of Waxy gene. Sci. China, C, Life Sci., 2002. 45(4): p. 352-60 [PMID:18759022]