PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P28960_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SBP
Protein Properties Length: 998aa    MW: 110882 Da    PI: 8.8812
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P28960_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP126.79.1e-40660736177
                            --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                    SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                            +Cq+egC  dl++ak+yhrrhkvCe+hska+ v+v+gl+qrfCqqCsrfh l efD++krsCr+rLa+hn+rrrk++
  GSMUA_Achr4P28960_001 660 RCQAEGCGIDLAHAKHYHRRHKVCEFHSKASIVIVAGLSQRFCQQCSRFHVLMEFDQGKRSCRKRLADHNRRRRKSH 736
                            6**************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF143891.7E-2225103IPR025757Ternary complex factor MIP1, leucine-zipper
PfamPF047847.0E-30305441IPR006869Domain of unknown function DUF547
Gene3DG3DSA:4.10.1100.101.7E-30655722IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.966658735IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.76E-37659736IPR004333Transcription factor, SBP-box
PfamPF031101.0E-29661734IPR004333Transcription factor, SBP-box
SMARTSM002351.9E-17768953IPR006026Peptidase, metallopeptidase
PRINTSPR001381.7E-22844872IPR021190Peptidase M10A
SuperFamilySSF554865.14E-26847957No hitNo description
PfamPF004131.3E-33847952IPR001818Peptidase M10, metallopeptidase
Gene3DG3DSA:3.40.390.103.0E-33848956IPR024079Metallopeptidase, catalytic domain
PRINTSPR001381.7E-22905930IPR021190Peptidase M10A
PRINTSPR001381.7E-22939952IPR021190Peptidase M10A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0005634Cellular Componentnucleus
GO:0031012Cellular Componentextracellular matrix
GO:0003677Molecular FunctionDNA binding
GO:0004222Molecular Functionmetalloendopeptidase activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 998 aa     Download sequence    Send to blast
MKSHGSQGSH HQNSSDNSRN AALSSRASLE DDIKQLQMHL HQEKSTRFLL EKAIGRASST  60
LSPGHRHFSA QTKELIAEIE LLEEEISNRE QHVLSLYRSI FDQCVSQPTS AHSSGMASPA  120
HSKSGGARKH PSIISSSFCS SKKFRLQPFQ VLASIKESRR SDVLLKPKVG HEPLAREDMK  180
LYARRNFEDP MKEKLSTSGR SHFARTLKDH LYQCPCRISE EMVRCMASIY CLIRCDSSEK  240
PGKPRSPFLP RSSTRGTAEE QEWLSRSTVE VPSLSIDKRC PPASYATSNY RFLVEQLERV  300
DVSVLETRAK LAFWINVYNA LIMHAYLVYG IPSSSLRRIS LFNKAAYTIG GQIITANCIE  360
YSLLCCRTSR MGRWLETILS TAMRKKHGEE KQLIDSKVGL PSCQPLVFFA LCIGAFSDPM  420
LRVYTAKHVI EELEKAKQEF LQAHVMVKKS SRVFLPRVLE RYAKETCIGC EKLLAWVHEA  480
VVDRKMNEAI HRCVASSGKR KASQIIEWLP YDTRFRYVIA SDMMENPNGL SRPKVRMMLD  540
HEWGNPAAAA AAMLLFDEEN GGRDNGQQHA PVFDHFSGHG LGGGGIAEFF PHPQPLTVAA  600
LFPSSSLTSS TCHERYGMPF QPLPARIGLN LGVRTYFSPA EEAGIVVGRV CRRRRAHAAR  660
CQAEGCGIDL AHAKHYHRRH KVCEFHSKAS IVIVAGLSQR FCQQCSRFHV LMEFDQGKRS  720
CRKRLADHNR RRRKSHDLSA KTATQTQNNN SSDASTDTPA GANTAKGETI LFSKPENESP  780
VTMHLPPLPM TRITAETGLW LGCSTGVAGA GTSMSSSKDT SPPGAPFLVQ LDEFRAPEQR  840
FTGWHEEVGF YSGDHGDGEP FDGVLGILAH AFSPESGNLH LDAAERWAVD LGKEESQVAV  900
DLESVATHEI GHVLGLGHSA VKEAVMYPSL SSRMKKVELR ADDVEGAQAL YGSNPDFRFS  960
QLVESETSSA HRYALRGGRG IPRRGWTGAA VVVSMLMV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-286617341184squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018680352.10.0PREDICTED: uncharacterized protein LOC103983366
TrEMBLM0ST080.0M0ST08_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P28960_0010.0(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.16e-47squamosa promoter binding protein-like 8