PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P29090_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 184aa    MW: 20055.3 Da    PI: 6.5142
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P29090_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.17.8e-171261155
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                           + y+G+r+++  g+Wv+eIr+p+    +  r++lg++ tae+Aa a++ a+ +l+g
  GSMUA_Achr4P29090_001 12 PSYRGIRYRS--GKWVSEIREPR----KaSRIWLGTYPTAEMAAVAYDVAAYALRG 61
                           57*****976..*********94....36*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.5E-101261IPR001471AP2/ERF domain
CDDcd000185.09E-181270No hitNo description
SMARTSM003803.7E-291375IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-191371IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.7E-281370IPR001471AP2/ERF domain
PROSITE profilePS5103221.0611369IPR001471AP2/ERF domain
PRINTSPR003672.7E-71425IPR001471AP2/ERF domain
PRINTSPR003672.7E-75171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MRMERSAPRK HPSYRGIRYR SGKWVSEIRE PRKASRIWLG TYPTAEMAAV AYDVAAYALR  60
GRDAVLNFPD EIASRPVPAS ASPAHIRMAA AEAAASLMPR TGAGDGSTAA SHHHHQQQQQ  120
QVGSHSGSSP GTEGQYVDEE EIFDMPQLLV NMAEGMLMSP PRLSPHGSED SPEASEGESL  180
WSYP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-16571674Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398861.11e-131PREDICTED: ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ902e-46ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLM0ST211e-130M0ST21_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P29090_0011e-131(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36542762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.13e-36ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]