PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr4P29470_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

WOX

Protein Properties

Length: 165aa MW: 18467.6 Da PI: 7.5773

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr4P29470_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.7	1.1e-19	74	134	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+t+t+ q+++Le+ F+ n +p +++++e++++l +++e++V++WFqNrRa+ k+ GSMUA_Achr4P29470_001 74 KQRWTPTAVQVRILESIFYHgNGTPRKQRIKEITSELsqhgQVSETNVYNWFQNRRARSKR 134 89***************98************************************97 PP
2	Wus_type_Homeobox	99.2	3e-32	73	136	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 a++RWtPt+ Q++iLe+++++G tP k++i++it+eL+++G+++++NV++WFQNr+aR+++kq GSMUA_Achr4P29470_001 73 AKQRWTPTAVQVRILESIFYHGNGTPRKQRIKEITSELSQHGQVSETNVYNWFQNRRARSKRKQ 136 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.9E-15	69	139	IPR009057	Homeodomain-like
PROSITE profile	PS50071	13.993	70	135	IPR001356	Homeobox domain
SMART	SM00389	1.6E-11	72	139	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.48E-17	73	137	IPR009057	Homeodomain-like
CDD	cd00086	9.31E-11	74	136	No hit	No description
Pfam	PF00046	2.3E-17	74	134	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MAEGAAEEGV LCAKVMTDEQ MEVLRSQISA YATICEQLVE MHRTMTAQQD SLSGTRSSHL 60 FADQPSGGAK ISAKQRWTPT AVQVRILESI FYHGNGTPRK QRIKEITSEL SQHGQVSETN 120 VYNWFQNRRA RSKRKQAFAA PSNTESEAEE ESPSEKKAKK EDAFT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	127	135	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018680504.1	1e-115	PREDICTED: LOW QUALITY PROTEIN: WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	1e-66	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	M0ST59	1e-120	M0ST59_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr4P29470_001	1e-120	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	3e-57	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]