PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P30170_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family B3
Protein Properties Length: 249aa    MW: 27705.1 Da    PI: 7.962
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P30170_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B393.31.8e-2955142184
                            EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                            f+kv tpsdv+k++rlv+pk++ae++     +  e+++ l +ed++g+ W ++++y+++s++yv+t+GW++Fvk++gL++gD+v F +
  GSMUA_Achr4P30170_001  55 FDKVVTPSDVGKLNRLVIPKQHAERYfpldTLADERGRLLCFEDRTGKPWHFRYSYWNSSQSYVITRGWSRFVKEKGLDAGDTVSFCR 142
                            89****************************66677899************************************************84 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.4E-3947144IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-2852143IPR015300DNA-binding pseudobarrel domain
CDDcd100171.86E-2553154No hitNo description
PROSITE profilePS5086314.62155158IPR003340B3 DNA binding domain
SMARTSM010199.2E-2055156IPR003340B3 DNA binding domain
PfamPF023621.7E-2655143IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MSEQEQEQLE VPEHPPFVTS CPSPSSSSTG FWWHDGSSGG GSGAVGSFVE KEHMFDKVVT  60
PSDVGKLNRL VIPKQHAERY FPLDTLADER GRLLCFEDRT GKPWHFRYSY WNSSQSYVIT  120
RGWSRFVKEK GLDAGDTVSF CRGVGEAGRH RLYIDSSGRV PMLLRSVPLV RDQAAVKRVR  180
LFGVNLNCPE SRDEASHHHS DTLSVSLPQL HPRTAFPLLK PPHASGDTPP DSSSSSICKG  240
KNTPLNLYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-54491552109B3 domain-containing transcription factor NGA1
5os9_B5e-54491552109B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7270011e-102KJ727001.1 Zea mays clone pUT3977 ABI3VP1 transcription factor (ABI8) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009397554.11e-147PREDICTED: B3 domain-containing protein Os02g0683500-like
SwissprotQ8LMR96e-62Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLM0STC90.0M0STC9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P30170_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.14e-55B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]