PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P30610_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WOX
Protein Properties Length: 184aa    MW: 20655.2 Da    PI: 8.2932
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P30610_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.22.1e-21767257
                           T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
               Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                           ++R+++t+eql +Lee++++  r+p+a+++++++++l    +++ ++V++WFqN++a+e++
  GSMUA_Achr4P30610_001  7 STRWCPTPEQLMILEEMYRSgVRTPNASQIQQITAHLslygKIEGKNVFYWFQNHKARERQ 67
                           58*****************99**************************************97 PP
2Wus_type_Homeobox122.91.2e-39668264
      Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                           ++tRW+PtpeQ++iLee+y+sG+rtPn+++iq+ita+L+ yGkie+kNVfyWFQN+kaRerqk
  GSMUA_Achr4P30610_001  6 PSTRWCPTPEQLMILEEMYRSGVRTPNASQIQQITAHLSLYGKIEGKNVFYWFQNHKARERQK 68
                           689***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.398368IPR001356Homeobox domain
SMARTSM003892.0E-7572IPR001356Homeobox domain
CDDcd000861.42E-5668No hitNo description
PfamPF000464.7E-19767IPR001356Homeobox domain
SuperFamilySSF466891.03E-11868IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-8967IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MPQTTPSTRW CPTPEQLMIL EEMYRSGVRT PNASQIQQIT AHLSLYGKIE GKNVFYWFQN  60
HKARERQKLR RRLGWQHQLL HQSEGPSSPT PPLHHQTPPN FPYQGCFHEV SSQGMNLVGK  120
LEAIQGQEEE PTGRNVLYAQ PCGSTDGPPC CRPLRTLDLF PTKSTGMADE CSSSKSSACS  180
TSTN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009397491.11e-136PREDICTED: WUSCHEL-related homeobox 3-like
TrEMBLM0STH31e-135M0STH3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P30610_0011e-135(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21773897
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.15e-41WOX family protein