PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P31310_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family YABBY
Protein Properties Length: 186aa    MW: 20677.7 Da    PI: 8.5899
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P31310_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY188.92.6e-5871595169
                  YABBY   5 ssseqvCyvqCn...fCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnveke 89 
                              +e++ yv+Cn   fCntilavsvP +slf++vtvrCGhC++llsv+++   q+ + +             + +++++ ++    + 
  GSMUA_Achr4P31310_001   7 IPPEHISYVHCNfcnFCNTILAVSVPGNSLFNIVTVRCGHCSNLLSVDMRALIQTNPFQGF--------PICNIESQGNGMECGLPS- 85 
                            579*******87222578******************************9999999888775........334555566666554443. PP

                  YABBY  90 esastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169
                            +s++ts   +++++++++e+p     ir P krqrvPsayn+fikeeiqrika+nP+ish++afs+aaknWahfP+ihfg
  GSMUA_Achr4P31310_001  86 KSTMTSL-LYTMPKDQEQELP-----IRAPGKRQRVPSAYNKFIKEEIQRIKANNPHISHKQAFSTAAKNWAHFPHIHFG 159
                            4444444.34689*******9.....9****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046905.5E-648159IPR006780YABBY protein
SuperFamilySSF470951.02E-796153IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.7E-4109152IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MSSTQVIPPE HISYVHCNFC NFCNTILAVS VPGNSLFNIV TVRCGHCSNL LSVDMRALIQ  60
TNPFQGFPIC NIESQGNGME CGLPSKSTMT SLLYTMPKDQ EQELPIRAPG KRQRVPSAYN  120
KFIKEEIQRI KANNPHISHK QAFSTAAKNW AHFPHIHFGQ TFDGNKLAKL DEPVAAPGCQ  180
KGQSFF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009397431.11e-138PREDICTED: protein YABBY 2-like
SwissprotQ10FZ72e-63YAB2_ORYSJ; Protein YABBY 2
TrEMBLM0STP31e-137M0STP3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P31310_0011e-138(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.22e-55YABBY family protein