PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P31420_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NF-YA
Protein Properties Length: 337aa    MW: 37072.1 Da    PI: 8.8886
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P31420_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA95.55.9e-30171226258
              CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                             p+YVNaKQ+++Il+RR++Rak+++e+k  +k rkpylheSRh hA+rR Rg+gGrF
  GSMUA_Achr4P31420_001 171 GPIYVNAKQFHAILRRRKARAKAQKENKS-IKVRKPYLHESRHLHAMRRMRGCGGRF 226
                            69**************************9.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.0E-33168229IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.297169229IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.2E-26172226IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.5E-23172194IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.5E-23203226IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MQTSMFFENH GVGRLLVSQT PQTTQFPWLV GSQPIYGEPL SQMKPITGDH ISVEEQLPAV  60
SRQVNHVIDL SKVRGSAFKI PEKGGNGTVS FSIFLDSKDL IKEQKIQQHL MPFSLQPSLP  120
ENPNCFEQGF GQSMVCPSSS YVDQFYGLYA TYGTQAMNGR MLLPMDMTTE GPIYVNAKQF  180
HAILRRRKAR AKAQKENKSI KVRKPYLHES RHLHAMRRMR GCGGRFLNSK KECSGQGGNG  240
GCKVKDGLPP RPATFARSEI LQSDSLNLNS ASGGSSASGS EVTSVYAQED VDDFHIAEHL  300
CPSVFQSHLI MMNGGQGTSN HSKWGAAADS CCDLLKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-18170244276NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009397416.10.0PREDICTED: nuclear transcription factor Y subunit A-8-like isoform X1
TrEMBLM0STQ40.0M0STQ4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P31420_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23073790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.36e-30nuclear factor Y, subunit A10