PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P31650_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NF-YA
Protein Properties Length: 228aa    MW: 24955.3 Da    PI: 6.7458
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P31650_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.81.6e-32104160158
              CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                            +ep+YVNaKQy++Il+RRq+Rak+e+++kl +k rkpylheSRh hA+rR+Rg+gGrF
  GSMUA_Achr4P31650_001 104 EEPVYVNAKQYHGILRRRQSRAKAESKNKL-AKVRKPYLHESRHLHAVRRARGCGGRF 160
                            69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.9E-35102163IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.096103163IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.8E-27105160IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.6E-24106128IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860108128IPR018362CCAAT-binding factor, conserved site
PRINTSPR006169.6E-24137160IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MTSSVQSLSD NSETDEQQDQ VQSENQHQPS ATASLHSGVA THLPGYMVPT SHFDVAQTVA  60
PAAYPFVDPY YGGMFAAYSG QHVIHPQLIG VNHPGVPLPT DAIEEPVYVN AKQYHGILRR  120
RQSRAKAESK NKLAKVRKPY LHESRHLHAV RRARGCGGRF LNSKSEADQQ NESQGNQQDE  180
AASDDMAQRS DVPASDERSA NKENTKLSSN RAEPSKVGDS DKLPVGNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A8e-21103166164NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009397392.11e-169PREDICTED: nuclear transcription factor Y subunit A-7
SwissprotQ84JP11e-55NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLM0STS71e-168M0STS7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P31650_0011e-169(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65553853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.25e-58nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]