PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P31770_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 593aa    MW: 65122.3 Da    PI: 6.342
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P31770_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.73.8e-17312358455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             hn  ErrRRdriN+++  L++l+P++      K +Ka++L +A+eY+ksLq
  GSMUA_Achr4P31770_001 312 VHNLSERRRRDRINEKMKALQDLIPHC-----NKTDKASMLDEAIEYLKSLQ 358
                            6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.55E-18303362No hitNo description
Gene3DG3DSA:4.10.280.102.0E-21305366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-21305373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.584308357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-14312358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-19314363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0009693Biological Processethylene biosynthetic process
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MSCGLLFVNF RIWPWLKEQR VKCLVGELRG ALSEAAIHQA MNHYVPDWAM DDDSGCLTDL  60
LPMTNQKKPM GPDNELIELL WRNGHVVMHS QSHRRPPANV DELKQAQKPD QVQKHEQQPL  120
GGSGNLMQDA DTGSWFQYPL DDSFEKEFCS EFFPEITGGA DAAADSDKIS KDLGGGSSST  180
KAGAQESSMM TVGSSTCGSN QIHAHTDPSN NLSHDAADIV TGLEEDTRMR VLSEGMQSKA  240
NECTLTSTSG GSGSSYGRTG QQNASDRSHK RKARDDVDDS GCQSEEVEYE SIEEKKPAQR  300
PISKRRSRAA EVHNLSERRR RDRINEKMKA LQDLIPHCNK TDKASMLDEA IEYLKSLQLQ  360
VQMMWMGSGM ASMMFPGVQQ YISSMGMGMG MGMGHASVPA IHGAVQLPRV PFVNQSVATA  420
SGTNQTSFFP SPAMNAVNFP NQMQNIHLPE SYARYLGMPI MPSHQATNFC TYGSQPVQQN  480
QSAGAPGGSL RPGAGGPNCA STENNRSDIS IVLCISINIL PLLHSQLHST IAFFHLVSFG  540
WISSNIFQRF LTLKLVNNSR IQGLTGDHLI CYLYLEQDWF LSAKIESGLS PVV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1303320KRRSRAAEVHNLSERRRR
2316321ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00082ChIP-seqTransfer from AT3G59060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009397370.10.0PREDICTED: transcription factor PIF4-like
RefseqXP_009397371.10.0PREDICTED: transcription factor PIF4-like
TrEMBLM0STT90.0M0STT9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P31770_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31073677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.13e-42phytochrome interacting factor 3-like 6