PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P32400_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family G2-like
Protein Properties Length: 251aa    MW: 27898.4 Da    PI: 10.2061
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P32400_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.17e-3272125255
                G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            pr+rWt+ LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  GSMUA_Achr4P32400_001  72 PRMRWTTALHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 125
                            9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.06E-1669126IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.2E-2969126IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-2372125IPR006447Myb domain, plants
PfamPF002491.6E-773124IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MATIFPDLSL HISPPSISAS RGEPTLTLGI EVPLTGSRDS RHHHHHQHHP QVFGFKRNPR  60
SSHGRSRSSR APRMRWTTAL HAHFVHAVEL LGGHERATPK SVLELMNVKD LTLAHVKSHL  120
QMYRTVKSSD RGGGGGGQAD MGMNQRTRVE EVEGGLPCDK AGNEITPSHN SFTMPTPPTP  180
LLNSPSLLYP SAERKAWNTS TNQNAVSPYP YFSSDHLLDS DTQVRSQHPQ VSYLHLKATM  240
KAKERTIYIY S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-1773127458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-1773127458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-1773127458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-1773127458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-1773127458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-1773127458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-1773127458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-1773127458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:19054366, ECO:0000269|PubMed:20444210}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009397301.21e-129PREDICTED: probable transcription factor KAN4
SwissprotQ9FJV59e-44KAN4_ARATH; Probable transcription factor KAN4
TrEMBLM0SU020.0M0SU02_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P32400_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37423168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.24e-37G2-like family protein
Publications ? help Back to Top
  1. Lora J,Hormaza JI,Herrero M
    Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
    New Phytol., 2015. 208(2): p. 584-95
    [PMID:25991552]
  2. Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
    Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
    BMC Plant Biol., 2016. 16(1): p. 143
    [PMID:27350128]
  3. Gomez MD,Ventimilla D,Sacristan R,Perez-Amador MA
    Gibberellins Regulate Ovule Integument Development by Interfering with the Transcription Factor ATS.
    Plant Physiol., 2016. 172(4): p. 2403-2415
    [PMID:27794102]