PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr4P32550_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

LBD

Protein Properties

Length: 210aa MW: 22188.2 Da PI: 9.4157

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr4P32550_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	92.6	4.6e-29	2	100	1	94
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +C++C+vlrr+C++ C+l+p++ + +q++++a+v+k+FG+s++l++l+++p +r++a++sl+yeA+ r+ +Pv Ga+g+++++ GSMUA_Achr4P32550_001 2 SCNGCRVLRRGCSATCILRPCIqcidgAGAQAHATAFVAKFFGRSTLLSFLSSVPLPRRPAAFRSLLYEACGRTINPVTGATGLLWTG 89 6*******************8888666899**************************************************** PP DUF260 84 qqqleqlkael 94 +++l+q+++ + GSMUA_Achr4P32550_001 90 NWHLCQAAVAT 100 ****98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.776	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.1E-26	2	98	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MSCNGCRVLR RGCSATCILR PCIQCIDGAG AQAHATAFVA KFFGRSTLLS FLSSVPLPRR 60 PAAFRSLLYE ACGRTINPVT GATGLLWTGN WHLCQAAVAT VLGGGTIHPL PELAGAADAK 120 ELYEYQRRGV SSSSSSSSPP PRKRRRDYDA KRPPTRELYP MPESPDGGGD NKRRASTPSA 180 TSASSVTTTS EGGCGDQTAA EKPAILNLFV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	145	RKRRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009397285.1	1e-152	PREDICTED: LOB domain-containing protein 37-like
Swissprot	Q9FN11	2e-57	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	M0SU17	1e-151	M0SU17_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr4P32550_001	1e-152	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4084	36	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	1e-58	LOB domain-containing protein 37

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]