PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P32760_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 327aa    MW: 35545.4 Da    PI: 8.7642
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P32760_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.8e-05249271123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C +Cgk+Fs+   L  H r+H
  GSMUA_Achr4P32760_001 249 HECLICGKVFSSGQALGGHKRRH 271
                            78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.1E-61336No hitNo description
PfamPF139122.4E-61336IPR007087Zinc finger, C2H2
PROSITE profilePS501579.2861436IPR007087Zinc finger, C2H2
SMARTSM003550.171436IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801636IPR007087Zinc finger, C2H2
SuperFamilySSF576671.1E-6179203No hitNo description
PfamPF139127.8E-10183208IPR007087Zinc finger, C2H2
SMARTSM00355180184204IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.58184211IPR007087Zinc finger, C2H2
SuperFamilySSF576678.96E-6246275No hitNo description
PROSITE profilePS5015710.887249276IPR007087Zinc finger, C2H2
SMARTSM003550.064249271IPR015880Zinc finger, C2H2-like
PfamPF139123.9E-11249273IPR007087Zinc finger, C2H2
PROSITE patternPS000280251271IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MEGDRLPPPP SAVHRCKFCK KSFPCGRSLG GHMRSHGNLA IVGDGDERPQ SSYGLRENPK  60
KTWRLSDSEL EKQSNCEVTP IAVPRRRRRT RRTPAAASCS LSGSERDRED EDGAISLMML  120
SRDVGRWGSG GSGSSESSVK NSVRNDPNSL SIAPKNDLEA VKCSSSGIDA KLETDHATEK  180
RSRFECAACK KTFGSYQALG GHRASYKRTK NCPGSRTDGS KNSTATEELV DRGEVSESSL  240
GWSRKSKEHE CLICGKVFSS GQALGGHKRR HLQQQQPHEM SDLLDLNLPA TAADGDSNST  300
NAGSTESKSW WIGENLKHET LVGVVSN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18489RRRRRT
28491RRRRRTRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6203497e-75JX620349.1 Gossypium hirsutum clone NBRI_GE66573 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009397260.11e-118PREDICTED: zinc finger protein ZAT9-like
TrEMBLM0SU380.0M0SU38_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P32760_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.12e-23C2H2-like zinc finger protein