PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P01180_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 260aa    MW: 28798.2 Da    PI: 10.7324
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P01180_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-171461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g WT+eEd++l+ +v+ +G g+W++ ++  g+ R++k+c++rw +yl
  GSMUA_Achr5P01180_001 14 KGTWTKEEDQRLISYVRTHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                           799*****************************99************97 PP
2Myb_DNA-binding55.81.1e-1767110146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            rg++T eEdel+++++  lG++ W++Ia++++ gR+++++k++w++
  GSMUA_Achr5P01180_001  67 RGSFTDEEDELIIKLHGSLGNK-WSAIAARLP-GRSDNEIKNHWNT 110
                            89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.102961IPR017930Myb domain
SMARTSM007175.7E-141363IPR001005SANT/Myb domain
SuperFamilySSF466894.67E-2913108IPR009057Homeodomain-like
PfamPF002493.5E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-241568IPR009057Homeodomain-like
CDDcd001671.61E-111661No hitNo description
PROSITE profilePS5129427.78562116IPR017930Myb domain
SMARTSM007171.0E-1666114IPR001005SANT/Myb domain
PfamPF002493.7E-1667110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-2769116IPR009057Homeodomain-like
CDDcd001672.24E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGRAPCCEKA HTNKGTWTKE EDQRLISYVR THGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGSF TDEEDELIIK LHGSLGNKWS AIAARLPGRS DNEIKNHWNT NIKRKLVGRG  120
LDPRTHRPVH GGSHDSQSSG RKKALPKPST VKNTPCVDRI TGQTIPKGFV FSRGKLGLPR  180
DLELDLRKLM LPHTTLKLKA TKGTAQNLDK LVNVAGPMGV THFLIPSNSK EHAPFACCKD  240
TARSNINLSC AISNSVGRGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-311311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018681931.11e-100PREDICTED: myb-related protein 308-like
SwissprotQ9SZP13e-79MYB4_ARATH; Transcription repressor MYB4
TrEMBLM0SUP70.0M0SUP7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P01180_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.13e-81myb domain protein 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Schenke D,Cai D,Scheel D
    Suppression of UV-B stress responses by flg22 is regulated at the chromatin level via histone modification.
    Plant Cell Environ., 2014. 37(7): p. 1716-21
    [PMID:24450952]
  3. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  4. Zhang J, et al.
    Soybean SPX1 is an important component of the response to phosphate deficiency for phosphorus homeostasis.
    Plant Sci., 2016. 248: p. 82-91
    [PMID:27181950]
  5. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  6. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  7. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]