PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P01230_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MIKC_MADS
Protein Properties Length: 211aa    MW: 24540.2 Da    PI: 9.6161
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P01230_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.81.4e-28959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           krien++nrqvtfskRrngi+KKA E+S+LC+a+v+v+ifss+gk+ ey+s
  GSMUA_Achr5P01230_001  9 KRIENSTNRQVTFSKRRNGIIKKAREISILCEAQVSVVIFSSSGKMSEYCS 59
                           79***********************************************96 PP
2K-box79.67.8e-2771167197
                  K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                            yq++sg++l++ak+esl+ e++++kke++n+q e+Rhl+GedL+sL+ keL  +e++L+ +l+++R+k++e+++ + ++ +  e+e++
  GSMUA_Achr5P01230_001  71 YQQNSGRKLWDAKHESLSAEIDRIKKENDNMQIELRHLKGEDLNSLNPKELIPIEDALQIGLTSVRDKQMEIWKLHKKNERLLEEENK 158
                            8999************************************************************************************ PP

                  K-box  89 eenkaLrkk 97 
                            + + +L+++
  GSMUA_Achr5P01230_001 159 QLTYMLHHQ 167
                            **9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.7E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.525161IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.89E-36296IPR002100Transcription factor, MADS-box
CDDcd002652.16E-41280No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-28323IPR002100Transcription factor, MADS-box
PfamPF003192.0E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.1E-1882164IPR002487Transcription factor, K-box
PROSITE profilePS5129715.17284170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MGRGKIEIKR IENSTNRQVT FSKRRNGIIK KAREISILCE AQVSVVIFSS SGKMSEYCSP  60
AATLPKILER YQQNSGRKLW DAKHESLSAE IDRIKKENDN MQIELRHLKG EDLNSLNPKE  120
LIPIEDALQI GLTSVRDKQM EIWKLHKKNE RLLEEENKQL TYMLHHQQLA MDGNVRELEI  180
GYHQKGREFA PHMTTMAFHV QPIQPNLQEN K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-17175173MEF2 CHIMERA
6byy_B2e-17175173MEF2 CHIMERA
6byy_C2e-17175173MEF2 CHIMERA
6byy_D2e-17175173MEF2 CHIMERA
6bz1_A2e-17175173MEF2 CHIMERA
6bz1_B2e-17175173MEF2 CHIMERA
6bz1_C2e-17175173MEF2 CHIMERA
6bz1_D2e-17175173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8693110.0EU869311.1 Musa acuminata AAA Group MADS-box protein MADS6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009399166.11e-156PREDICTED: MADS-box transcription factor 2
SwissprotQ0HA251e-106MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLD4HM441e-155D4HM44_MUSAC; MADS-box protein MADS6
TrEMBLM0SUQ21e-155M0SUQ2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P01230_0011e-155(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34343877
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.16e-78MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]