PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P01720_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 228aa    MW: 24204.2 Da    PI: 7.8941
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P01720_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.001485107123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C+ Cgk F +   L  H ++H
  GSMUA_Achr5P01720_001  85 HRCSVCGKAFGSYQALGGHKSSH 107
                            79********9999999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.44E-885157No hitNo description
PROSITE profilePS5015710.13885112IPR007087Zinc finger, C2H2
PfamPF139129.3E-1385109IPR007087Zinc finger, C2H2
SMARTSM003550.04585107IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
PfamPF139125.5E-14134159IPR007087Zinc finger, C2H2
PROSITE profilePS501578.974135157IPR007087Zinc finger, C2H2
SMARTSM003550.31135157IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280137157IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0042538Biological Processhyperosmotic salinity response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAVQTLETTV STAIPLLSDE TSDEELPHIV GWAKRKRSKR FFDHPTTEEE YLALCLVMLA  60
RGGGSGTHRL PALASDSAPP AKLEHRCSVC GKAFGSYQAL GGHKSSHRKP SSGVEEASAS  120
GSSTASAAFV GARVHRCSVC LKTFPSGQAL GGHKRCHYDG SLASGAAAAM TSSEGASSNH  180
RAFDLNVPAS PDSEFDNVKR WLATMKPEEE EEVQSPLAFK KPRLVIPA
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00118ampDAPTransfer from AT5G67450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009399109.11e-167PREDICTED: zinc finger protein 1-like
SwissprotQ424301e-45ZFP1_WHEAT; Zinc finger protein 1
TrEMBLM0SUV11e-166M0SUV1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P01720_0011e-167(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.12e-41salt tolerance zinc finger