PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P02190_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family LBD
Protein Properties Length: 166aa    MW: 17914.5 Da    PI: 8.7016
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P02190_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260137.25.9e-43131121100
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                            +CaaCk+lrr+Ca dCv+ap+fpa++p+kfanvh++FGasnv+kll+++  ++r da+sslvyeA+ar+rdPvyG+vgvi++l+ q++
  GSMUA_Achr5P02190_001  13 PCAACKLLRRRCAWDCVFAPHFPADEPQKFANVHRVFGASNVSKLLQEIAVQHRGDAVSSLVYEANARVRDPVYGCVGVISSLHCQVQ 100
                            7*************************************************************************************** PP

                 DUF260  89 qlkaelallkee 100
                             l+a+la+++++
  GSMUA_Achr5P02190_001 101 ALEAQLAMARAQ 112
                            *******99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.37812113IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-4213110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MKEAGRQHGT ASPCAACKLL RRRCAWDCVF APHFPADEPQ KFANVHRVFG ASNVSKLLQE  60
IAVQHRGDAV SSLVYEANAR VRDPVYGCVG VISSLHCQVQ ALEAQLAMAR AQMVRLRMLA  120
HLDLGRSPTG TGSTTTGSSS MCPSPIYTPG HGDAGQTPML SFSYER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-4591357130LOB family transfactor Ramosa2.1
5ly0_B8e-4591357130LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2260461e-40AC226046.1 Musa acuminata clone BAC MA4-72F16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009399059.11e-122PREDICTED: LOB domain-containing protein 4-like
SwissprotQ9SHE97e-56LBD4_ARATH; LOB domain-containing protein 4
TrEMBLM0SUZ81e-120M0SUZ8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P02190_0011e-121(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88238150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.18e-58LOB domain-containing protein 4