PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P02280_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 544aa    MW: 60687.4 Da    PI: 6.3673
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P02280_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.49.3e-17319365455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  GSMUA_Achr5P02280_001 319 VHNLSERRRRDRINEKMKALQELIPHC-----NKTDKASMLDEAIEYLKTLQ 365
                            6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.34E-17310369No hitNo description
SuperFamilySSF474596.28E-21312380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.266315364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-21319373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-14319365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-19321370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MNQYVPDWTM EDDSGRLTDL LPMTNQRKPM GPDNELVELL WRNGHVVMHS QTHRRTPVGE  60
FKQASKPDPV QKYEQSLGDS SNLIQEAEAA SWFQFPLDDS FEKEFCSEFF PEITGTDTVV  120
SEKISKDFTA EEEDRYLKFG FTDDGTAFTA PAPKQSVPHP QDNIMPPPRS HVMGSTPQSS  180
SLENSNSGAG AQESSMMTVG SSACGSNQIQ AQTDPSNNIS NDAADIVTRL REGTGMRLLS  240
ERMQSKAHEG TVTSSSGGSG CSYGRSAQQN ESNHSHKRRK ARDVEESGCQ SEEAEYESID  300
EKKQATRPTS KRRSRAAEVH NLSERRRRDR INEKMKALQE LIPHCNKTDK ASMLDEAIEY  360
LKTLQLQVQM MWMGSGMASM MFPCVQQYIS GMGMGIGMSH ASMSAIHSAV QLPRVPFQTF  420
PARCRTFIFP NHMPGTLVFI TFVHMDRTWC SIINQQHHLI PLSRLLPEDL QVSGTTNLIK  480
GGTSNLESAL LFISDNSLWT CRGVGAAMIR GQKIGIDRSP CCLLLVNPPD HLLKPEIVMY  540
ITRE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1310327KRRSRAAEVHNLSERRRR
2323328ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFM8787570.0FM878757.1 Musa acuminata subsp. burmannicoides var. calcutta 4 mRNA containing microsatellite, clone MAC4-51B23-F.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009399053.10.0PREDICTED: transcription factor PIF4-like
TrEMBLM0SV070.0M0SV07_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P02280_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31073677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.22e-40phytochrome interacting factor 4