PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P03100_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 274aa    MW: 29502.4 Da    PI: 6.6367
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P03100_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.74.9e-09125169554
                            HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            h+++Er RR+ri +++  L+el+P+       K + a++L +  +Y+k L
  GSMUA_Achr5P03100_001 125 HSIAERLRRERIAERIRALQELVPNT-----NKTDRAAMLDEILDYVKFL 169
                            99***********************7.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.58E-15118179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.802120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-14122179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-6125169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-10126175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MANQPPHQQP DGMADDFFEQ IFSLPSSYTA GGDAGLGGAD GSLAGVPLHR RPADVPGGQE  60
RDTFPSAGLF APGFGHIQSH QMRPNPPPPQ AFHGQAKQGG VAAFPQPPAP RPKVRARRGQ  120
ATDPHSIAER LRRERIAERI RALQELVPNT NKTDRAAMLD EILDYVKFLR LQVKVLSMSR  180
LGGAGAVAQL IADIPLAVEG EAGKGGTNQQ VWEKWSTDGT ERQVAKLMEE DIGAAMQFLQ  240
SKALCMMPIS LAMAIYDAHQ PDAQPVKPEP DTPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129134RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009399361.11e-173PREDICTED: transcription factor UNE12
SwissprotO227682e-77UNE12_ARATH; Transcription factor UNE12
TrEMBLM0SV890.0M0SV89_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P03100_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.33e-66bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]