PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P03140_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family HB-other
Protein Properties Length: 77aa    MW: 9018.41 Da    PI: 8.4871
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P03140_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.23.2e-0922522454
                           S--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
               Homeobox 24 ypsaeereeLAkklgLterqVkvWFqNrRak 54
                           yp+ +e+  LA+k+gLt +q+++WF N R +
  GSMUA_Achr5P03140_001 22 YPDDTEKLMLASKTGLTRNQISNWFINARVR 52
                           9****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.4E-4160IPR001356Homeobox domain
PROSITE profilePS5007110.5112256IPR001356Homeobox domain
PfamPF059201.0E-122252IPR008422Homeobox KN domain
CDDcd000862.43E-92257No hitNo description
SuperFamilySSF466892.44E-132263IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-182262IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
MSRLKSNKLD LTILRCVSFL LYPDDTEKLM LASKTGLTRN QISNWFINAR VRIWKPMIEE  60
MYREEFAEDT GNLSTSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009399363.12e-31PREDICTED: BEL1-like homeodomain protein 11 isoform X2
SwissprotQ1PFD13e-22BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLM0SV932e-49M0SV93_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P03140_0013e-50(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.11e-24BEL1-like homeodomain 11