PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P05010_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 871aa    MW: 98035.2 Da    PI: 5.98
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P05010_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.54.6e-2239140199
                            EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                            f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+
  GSMUA_Achr5P05010_001  39 FCKTLTASDTSTHGGFSVPRRAAEKIfpaldfsM-QPPA-QEIQARDLHENLWTFRHIYRGQPKRHLLTTGWSLFVSGKKLFAGDSVL 124
                            99*****************************954.4444.48********************************************** PP

                            EEE-SSSEE..EEEEE-S CS
                     B3  82 Fkldgrsefelvvkvfrk 99 
                            F   ++++++l+++++r+
  GSMUA_Achr5P05010_001 125 FI--RDEKQQLLLGIRRA 140
                            **..5688889****997 PP
2Auxin_resp115.25.7e-38165248183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            aahaa+++s+F+v+YnPra++seFv++++k++ka++ +++ +GmRf+m fete+s +rr++Gt++g+sdldpvrW+nS+W +L+
  GSMUA_Achr5P05010_001 165 AAHAAANNSPFTVFYNPRACPSEFVIPFAKYQKAVYsNQIFLGMRFRMLFETEESGTRRYMGTITGISDLDPVRWKNSQWHNLQ 248
                            79*********************************9899******************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-4229168IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.0E-4031154IPR015300DNA-binding pseudobarrel domain
CDDcd100174.73E-1838130No hitNo description
SMARTSM010191.4E-2139141IPR003340B3 DNA binding domain
PROSITE profilePS5086311.60339141IPR003340B3 DNA binding domain
PfamPF023621.9E-2039140IPR003340B3 DNA binding domain
PfamPF065077.1E-33165248IPR010525Auxin response factor
PfamPF023091.3E-8736823IPR033389AUX/IAA domain
PROSITE profilePS5174527.539738822IPR000270PB1 domain
SuperFamilySSF542773.24E-7751816No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 871 aa     Download sequence    Send to blast
MMRTIVPISH TFLTIAYEKE ALLASELALK QTRSPTEFFC KTLTASDTST HGGFSVPRRA  60
AEKIFPALDF SMQPPAQEIQ ARDLHENLWT FRHIYRGQPK RHLLTTGWSL FVSGKKLFAG  120
DSVLFIRDEK QQLLLGIRRA NRQPTSISSS VLSSDSMHIG ILAAAAHAAA NNSPFTVFYN  180
PRACPSEFVI PFAKYQKAVY SNQIFLGMRF RMLFETEESG TRRYMGTITG ISDLDPVRWK  240
NSQWHNLQVG WDESAAGERH NRVSIWEIEP VIAPFFICPP FFRKRTRQPG MLDDESSEME  300
NIFKRAMPWL GEETCIKDSE TQSTVMPGLS LVQWMNMQQN PSLASQTLQT EYLCSLAGPV  360
RNLGTTDLSR PLGLQASKQN NIIQPQVLIQ IQLQQQQHQP QQEPPTMIQN KELLQTSLHQ  420
NQQQHPQQLL LQQQKQQQQH QDQQLEQQYQ PQPSRILAVN QQLSDQQQSS FSQPRMQQPP  480
FPQIQESQKT LPDVLQQLLN SHSLVQQPMI PQPSEGTQSG FTNDNPFCST SPSANNGAIL  540
PHSILNGIQN YTLESTEKTS QSPLTPFSKV QNQGVIAPQT CVGNTTQMDY LDTTSSATSV  600
CLSQTDGPLH KIFPLSSFNQ PSMLRVAPTY GDVQGTDPGD NVPFGDNIDS SLELPLTIDT  660
MLANSIDSGK YQNRITRDVV ANYNASKDAQ QDLSLSMVSQ AFGIPDMAFN SIDSTTNENV  720
FLTKSSWTPV PPPLQHMRTY TKVYKRGAVG RSIDITRYSG YDELKYDLAR MFSIEGQLED  780
RQRIGWKLVY VDHENDVLLV GDDPWEEFVN CVRCIKILSP QEVQQMSIDV DLENNSLLNQ  840
ACSSSDGGNA WRGHHDQNSG NLSAGSYDHF E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-12329269148388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009399614.10.0PREDICTED: auxin response factor 19-like isoform X2
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLM0SVT00.0M0SVT0_MUSAM; Auxin response factor
STRINGGSMUA_Achr5P05010_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90453338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.11e-157auxin response factor 19