PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P05160_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 191aa    MW: 20622.8 Da    PI: 5.7037
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P05160_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.4e-181463255
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           +ykGVr++k +grWv+eIr p++   r r++lg++ ++e+Aa+a +aa+ +l+g
  GSMUA_Achr5P05160_001 14 RYKGVRRRK-WGRWVSEIRLPNS---RERIWLGSYESPEKAARAFDAAAVCLRG 63
                           8*****998.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.25E-201373No hitNo description
PROSITE profilePS5103222.9581471IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-301473IPR001471AP2/ERF domain
PfamPF008475.3E-111463IPR001471AP2/ERF domain
SMARTSM003801.5E-341477IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-211473IPR016177DNA-binding domain
PRINTSPR003672.8E-111526IPR001471AP2/ERF domain
PRINTSPR003672.8E-115373IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MTEREGSGSA GAKRYKGVRR RKWGRWVSEI RLPNSRERIW LGSYESPEKA ARAFDAAAVC  60
LRGRRARLNF PDSPPPQITG GAWRLTHQQI QAAAARHAAA APGPTQPPTP VDSPAASSPA  120
SDGFTAGSDD ALDWSFMDPQ LVAPLTVDGD FPAPFDDFMY DFSSSVPATP LDVADDHGGV  180
DFGSNSFLWS F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1314711472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11521KGVRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009399647.11e-136PREDICTED: ethylene-responsive transcription factor ERF017-like
TrEMBLM0SVU51e-134M0SVU5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P05160_0011e-135(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.15e-37ERF family protein