PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P05300_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HD-ZIP

Protein Properties

Length: 206aa MW: 23588.7 Da PI: 7.2727

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P05300_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.5	1.5e-20	72	126	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++t+eq++ Le+ Fe ++++ e++ eLA+klg++ rqV vWFqNrRa++k+ GSMUA_Achr5P05300_001 72 KKRRLTPEQVHLLERSFEAENKLEPERKGELARKLGMQPRQVAVWFQNRRARWKN 126 5678*************************************************95 PP
2	HD-ZIP_I/II	129.9	1e-41	71	160	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 ekkrrl+ eqv+lLE+sFe+e+kLeperK elar+Lg+qprqvavWFqnrRAR+k+kqlE+d+++Lk++y++l +++++L +e+++Lr GSMUA_Achr5P05300_001 71 EKKRRLTPEQVHLLERSFEAENKLEPERKGELARKLGMQPRQVAVWFQNRRARWKNKQLEHDFDRLKSSYNTLLADHDSLLRENDRLR 158 69*************************************************************************************9 PP HD-ZIP_I/II 89 ee 90 ++ GSMUA_Achr5P05300_001 159 SQ 160 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	17.556	67	127	IPR001356	Homeobox domain
SMART	SM00389	2.3E-20	70	131	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.21E-19	72	138	IPR009057	Homeodomain-like
CDD	cd00086	1.73E-17	72	128	No hit	No description
Pfam	PF00046	8.6E-18	72	126	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.3E-22	73	134	IPR009057	Homeodomain-like
PRINTS	PR00031	3.7E-6	98	107	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	102	125	IPR017970	Homeobox, conserved site
PRINTS	PR00031	3.7E-6	107	123	IPR000047	Helix-turn-helix motif
Pfam	PF02183	9.2E-14	127	164	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MDSGRLIFHS SLSHGHHGQQ MILLGGGGPV FGGGFLPVSA VEGASKRRPF FTSPDELLEE 60 EYYYYDEQLP EKKRRLTPEQ VHLLERSFEA ENKLEPERKG ELARKLGMQP RQVAVWFQNR 120 RARWKNKQLE HDFDRLKSSY NTLLADHDSL LRENDRLRSQ AYTLSLSPLD SKITPPSSSI 180 VFDEMVGVGA IGEWPPSCCY VRLHYG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	127	RRARWKNKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:8535134}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009399661.1	1e-89	PREDICTED: homeobox-leucine zipper protein HOX16-like
Swissprot	Q02283	1e-57	HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBL	M0SVV9	1e-151	M0SVV9_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P05300_001	1e-152	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2609	38	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	7e-52	homeobox 1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Arce AL,Chan RL A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype. Plant Physiol., 2017. 175(3): p. 1238-1253 [PMID:28956754]