PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P05350_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bZIP

Protein Properties

Length: 164aa MW: 18944.4 Da PI: 11.0501

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P05350_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	40.5	6.1e-13	68	127	3	62
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 e +r rr+++NRe+ArrsR RK++++ eL v +L + N L +el++ + e + + e GSMUA_Achr5P05350_001 68 EERRKRRMISNRESARRSRMRKQKRLSELWSQVIQLRSANCHLLDELNRVRRERVQITHE 127 6789*********************************************99988777666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.2E-12	66	130	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.289	68	131	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.9E-10	68	124	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.0E-10	70	123	No hit	No description
SuperFamily	SSF57959	3.3E-11	70	122	No hit	No description
CDD	cd14702	8.64E-16	71	120	No hit	No description
PROSITE pattern	PS00036	0	73	88	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MHPGEIAGIC YLSPSSSASL RAHYSMSQNN ITSSQFSSLF GPYIAQQFQT EPTMHGFGAV 60 GHQLSAAEER RKRRMISNRE SARRSRMRKQ KRLSELWSQV IQLRSANCHL LDELNRVRRE 120 RVQITHENDR LRVEETELHK RLGNLIPEFA CAPRRADQSR FHGS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	69	90	RRKRRMISNRESARRSRMRKQK
2	82	89	RRSRMRKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009400114.1	1e-117	PREDICTED: uncharacterized protein LOC103984352
TrEMBL	M0SVW4	1e-117	M0SVW4_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P05350_001	1e-118	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1186	35	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G04038.1	4e-21	basic leucine-zipper 48