PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P05450_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 287aa    MW: 31272.2 Da    PI: 6.6026
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P05450_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.81.1e-14101152155
                            CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +r++h ++Er+RR+++N+ ++ Lr+l+P +   +s++ + a+++e A++++++L+
  GSMUA_Achr5P05450_001 101 QRMTHIAVERNRRKQMNEYLAVLRSLMPAS---HSQRGDQASTVEGAINFVRELE 152
                            79****************************...******************9995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.0E-1499156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.16E-1399156No hitNo description
SuperFamilySSF474595.1E-17100170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.58100151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-12101152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-11106157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MASEAVVFQH DLPGVAMKEL YDVGGAAPGY GFGGERGRHG RWSTCCSSPV QNFDDWDVDS  60
PPTPGAAAAL REETAGTGEA VGRSKRQRTK RVKSEEEVEN QRMTHIAVER NRRKQMNEYL  120
AVLRSLMPAS HSQRGDQAST VEGAINFVRE LEQLVHSLEA RKRVKQRSKA SPFSAFFTFP  180
QYSSASSPCT NTESSGAAAD VEVIVIESHA NVKIFSRRRA GQLLKLVGGM QSLRLTALHL  240
NVTAVDEMVL YCLSVKVEDG CQLTSVDEIA TAIHGILAEI EEEAGHG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18590RQRTKR
2101112RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009400115.10.0PREDICTED: transcription factor bHLH94-like
SwissprotQ9C7T45e-70BH096_ARATH; Transcription factor bHLH96
TrEMBLM0SVX40.0M0SVX4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P05450_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.13e-72bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]