PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P05500_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

ZF-HD

Protein Properties

Length: 238aa MW: 24819.6 Da PI: 7.85

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P05500_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	95.8	3.4e-30	62	114	5	58
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 rY+eClkNhA+ +GghavDGCgEf+++ ge+gt +al+CaAC CHRnFHR+e e GSMUA_Achr5P05500_001 62 RYRECLKNHAVGIGGHAVDGCGEFLAA-GEDGTLDALRCAACSCHRNFHRKEAE 114 8***********************9.999******************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	7.6E-28	62	113	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	8.0E-22	62	111	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.2E-28	62	112	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.295	63	112	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	8.6E-19	163	236	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.9E-31	166	237	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.2E-23	175	231	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MDFDDHDETE EEMGLPVGSS YETPMPNSPR GGGGARMGGG EGEAGGLGSG NRKVGGGAGG 60 GRYRECLKNH AVGIGGHAVD GCGEFLAAGE DGTLDALRCA ACSCHRNFHR KEAEGGEGGR 120 GGGGALEVAG YHHQFSPFYR TAAGLLPLAL PSTGGGGGGY AAGGGMGASG SGSHRKRFRT 180 KFTQDQKDKM LVFAERVGWR IQKQDEAAVQ QFCDETCVKR HVLKVWMHNN KHTLGKKP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-25	176	233	18	75	ZF-HD homeobox family protein
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	117	123	GGRGGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012617	6e-56	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009399684.1	1e-116	PREDICTED: zinc-finger homeodomain protein 1-like
Swissprot	Q6YXH5	4e-89	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	M0SVX9	1e-171	M0SVX9_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P05500_001	1e-172	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3950	32	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	2e-57	homeobox protein 22

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]