PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P06260_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 103aa    MW: 12351.2 Da    PI: 10.5017
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P06260_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.46.3e-332684159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY  1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                           ldDgy+WrKYGqK+vk++++prsYYrCt+++C+vkk++er  edp++v++tYeg+H h+
  GSMUA_Achr5P06260_001 26 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQENCRVKKRIERLPEDPRMVITTYEGRHVHS 84
                           59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-341184IPR003657WRKY domain
SuperFamilySSF1182903.79E-291885IPR003657WRKY domain
PROSITE profilePS5081129.1262186IPR003657WRKY domain
SMARTSM007743.8E-362685IPR003657WRKY domain
PfamPF031061.2E-252783IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MKKVKAKRKV REPRFCFKTM SEVDVLDDGY KWRKYGQKVV KNTQHPRSYY RCTQENCRVK  60
KRIERLPEDP RMVITTYEGR HVHSPSHDES SSSQVSSKVT VFW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-281783874Probable WRKY transcription factor 4
2lex_A7e-281783874Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009399778.11e-71PREDICTED: probable WRKY transcription factor 13
SwissprotQ9SVB72e-53WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLM0SW552e-70M0SW55_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P06260_0014e-71(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113838130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.17e-50WRKY DNA-binding protein 13