PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P06530_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

MYB

Protein Properties

Length: 375aa MW: 42214.7 Da PI: 9.1443

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P06530_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.7	2e-16	35	82	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEde l++ v++ G g+W+t +++ g+ R++k+c++rw +yl GSMUA_Achr5P06530_001 35 RGPWTAEEDEVLARFVRREGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 82 89****************************99**********97 PP
2	Myb_DNA-binding	52.3	1.3e-16	88	133	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l GSMUA_Achr5P06530_001 88 RGPITPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 133 8999****************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.647	30	82	IPR017930	Myb domain
SuperFamily	SSF46689	1.39E-29	32	129	IPR009057	Homeodomain-like
SMART	SM00717	4.2E-12	34	84	IPR001005	SANT/Myb domain
Pfam	PF00249	2.0E-14	35	82	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.6E-21	36	89	IPR009057	Homeodomain-like
CDD	cd00167	4.62E-10	37	82	No hit	No description
PROSITE profile	PS51294	26.648	83	137	IPR017930	Myb domain
SMART	SM00717	2.2E-16	87	135	IPR001005	SANT/Myb domain
Pfam	PF00249	2.6E-15	88	133	IPR001005	SANT/Myb domain
CDD	cd00167	2.73E-12	90	133	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.9E-26	90	138	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MRSPSQSSDA MEVERRRGGP TRTATPCCSK VGMKRGPWTA EEDEVLARFV RREGEGRWRT 60 LPKRAGLLRC GKSCRLRWMN YLRPSVKRGP ITPDEEDLIL RLHRLLGNRW SLIAGRIPGR 120 TDNEIKNYWN THLNRKLIKQ GIDPRTHKPF AFPTDPAPAA PSAPRHPTEN PNTIPSVPQE 180 PGNGVLDGFN LHYNDSVGWQ ASEAFASEGN RALHGSREEG RRGADDVLSD LLDSFVNDDI 240 FMQQQHINNN YGSNIADNTT ITTTDNNKNS EMIDPTGTSS FQILSFYLSL GNKLSCKPLI 300 INYMAYILQK VFIVYMISSA KNSASSFISR SGSMLSPFSG SIDIYGININ PFCRYDILHY 360 IWFVSTSKTY SMDLC

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MRSPSQSSDA MEVERRRGGP TRTATPCCSK VGMKRGPWTA EEDEVLARFV RREGEGRWRT  60
LPKRAGLLRC GKSCRLRWMN YLRPSVKRGP ITPDEEDLIL RLHRLLGNRW SLIAGRIPGR  120
TDNEIKNYWN THLNRKLIKQ GIDPRTHKPF AFPTDPAPAA PSAPRHPTEN PNTIPSVPQE  180
PGNGVLDGFN LHYNDSVGWQ ASEAFASEGN RALHGSREEG RRGADDVLSD LLDSFVNDDI  240
FMQQQHINNN YGSNIADNTT ITTTDNNKNS EMIDPTGTSS FQILSFYLSL GNKLSCKPLI  300
INYMAYILQK VFIVYMISSA KNSASSFISR SGSMLSPFSG SIDIYGININ PFCRYDILHY  360
IWFVSTSKTY SMDLC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-27	35	137	7	108	B-MYB
1mse_C	5e-27	35	137	4	105	C-Myb DNA-Binding Domain
1msf_C	5e-27	35	137	4	105	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009399810.2	0.0	PREDICTED: transcription repressor MYB5-like
Swissprot	Q38850	5e-80	MYB5_ARATH; Transcription repressor MYB5
TrEMBL	M0SW82	0.0	M0SW82_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P06530_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	5e-77	myb domain protein 5

Publications ? help Back to Top
Ranocha P,Francoz E,Burlat V,Dunand C Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion. Plant Signal Behav, 2014. 9(11): p. e977734 [PMID:25531128]