PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P06590_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

MIKC_MADS

Protein Properties

Length: 175aa MW: 20213.5 Da PI: 10.3022

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P06590_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.2	1.6e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fss+g+lyey++ GSMUA_Achr5P06590_001 9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYAT 59 79***********************************************86 PP
2	K-box	82.2	1.2e-27	82	146	9	73
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnell 73 +e +a+++qqe++kL ++i+nLq+++R+l+Ge+L+s+sl++L+qLe++Lek+++kiR+kK +l+ GSMUA_Achr5P06590_001 82 PSEGNAQYYQQEASKLHQQINNLQSTNRNLMGESLNSMSLRDLKQLETRLEKGINKIRTKKANLF 146 67889********************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	8.8E-43	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	34.258	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.06E-33	2	74	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.69E-44	2	75	No hit	No description
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.7E-33	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.7E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.7E-33	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.7E-33	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	2.2E-21	86	146	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	10.51	87	175	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALVVFSS RGRLYEYATS 60 SVKESIERYK KACSDTTNTG FPSEGNAQYY QQEASKLHQQ INNLQSTNRN LMGESLNSMS 120 LRDLKQLETR LEKGINKIRT KKANLFKLCA NLFAIRIMCF YYLHGLFKKM LIPHI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	2e-21	1	69	1	69	Myocyte-specific enhancer factor 2B
1tqe_Q	2e-21	1	69	1	69	Myocyte-specific enhancer factor 2B
1tqe_R	2e-21	1	69	1	69	Myocyte-specific enhancer factor 2B
1tqe_S	2e-21	1	69	1	69	Myocyte-specific enhancer factor 2B
6c9l_A	2e-21	1	69	1	69	Myocyte-specific enhancer factor 2B
6c9l_B	2e-21	1	69	1	69	Myocyte-specific enhancer factor 2B
6c9l_C	2e-21	1	69	1	69	Myocyte-specific enhancer factor 2B
6c9l_D	2e-21	1	69	1	69	Myocyte-specific enhancer factor 2B
6c9l_E	2e-21	1	69	1	69	Myocyte-specific enhancer factor 2B
6c9l_F	2e-21	1	69	1	69	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009399817.1	1e-99	PREDICTED: MADS-box transcription factor 3-like isoform X1
Swissprot	Q43585	4e-79	AG_TOBAC; Floral homeotic protein AGAMOUS
TrEMBL	M0SW88	1e-126	M0SW88_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P06590_001	1e-127	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP649	37	144

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09960.4	5e-77	MIKC_MADS family protein

Publications ? help Back to Top
Cheung AY,Zhan XY,Wang H,Wu HM Organ-specific and Agamous-regulated expression and glycosylation of a pollen tube growth-promoting protein. Proc. Natl. Acad. Sci. U.S.A., 1996. 93(9): p. 3853-8 [PMID:8632979]